Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O19
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08985|H2AV_DROME Histone H2A variant 104 7e-23
sp|P02272|H2AV_CHICK Histone H2A variant 102 3e-22
sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z) 102 3e-22
sp|P08991|H2AV_STRPU Histone H2A variant 102 3e-22
sp|P22647|H2AZ_ONCMY Histone H2A.Z 102 3e-22
sp|P08992|H2AV_TETTH Histone H2A variant 92 3e-19
sp|P48003|H2AV_SCHPO Histone H2A variant 90 2e-18
sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z) 86 2e-17
sp|O74268|H2A_BOTCI Histone H2A 65 4e-11
sp|O13413|H2A_ASPNG Histone H2A 65 5e-11
>sp|P08985|H2AV_DROME Histone H2A variant
Length = 141
Score = 104 bits (259), Expect = 7e-23
Identities = 53/65 (81%), Positives = 56/65 (86%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQKPM 140
GNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Q P
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEETVQDPQ 130
Query: 139 *MKNI 125
N+
Sbjct: 131 RKGNV 135
>sp|P02272|H2AV_CHICK Histone H2A variant
Length = 128
Score = 102 bits (254), Expect = 3e-22
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 164
GNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z)
Length = 128
Score = 102 bits (254), Expect = 3e-22
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 164
GNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P08991|H2AV_STRPU Histone H2A variant
Length = 125
Score = 102 bits (254), Expect = 3e-22
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 164
GNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 68 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 119
>sp|P22647|H2AZ_ONCMY Histone H2A.Z
Length = 128
Score = 102 bits (254), Expect = 3e-22
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 164
GNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P08992|H2AV_TETTH Histone H2A variant
Length = 146
Score = 92.4 bits (228), Expect = 3e-19
Identities = 44/51 (86%), Positives = 48/51 (94%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGK 167
GNASKD KV+RI+PRHL LAIRGDEELD LIKATIAGGGVIPHIHK+L+GK
Sbjct: 81 GNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
>sp|P48003|H2AV_SCHPO Histone H2A variant
Length = 171
Score = 89.7 bits (221), Expect = 2e-18
Identities = 42/49 (85%), Positives = 48/49 (97%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLI 173
GNA+KDLKVKRI+PRHLQLAIRGDEELDTLI+ATIAGGGV+PHI+K L+
Sbjct: 109 GNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z)
Length = 134
Score = 86.3 bits (212), Expect = 2e-17
Identities = 42/58 (72%), Positives = 51/58 (87%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQK 146
GNA+KDLKVKRI+PRHLQLAIRGD+ELD+LI+ATIA GGV+PHI+K+L+ K G K
Sbjct: 76 GNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKKGSK 133
>sp|O74268|H2A_BOTCI Histone H2A
Length = 137
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 164
GNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH+SL+ KK
Sbjct: 71 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPKK 123
>sp|O13413|H2A_ASPNG Histone H2A
Length = 134
Score = 65.1 bits (157), Expect = 5e-11
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Frame = -3
Query: 319 GNASKDLKVKRISPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK-PIIGQK 146
GNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH++L+ KK P G+
Sbjct: 69 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128
Query: 145 P 143
P
Sbjct: 129 P 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,034,152
Number of Sequences: 369166
Number of extensions: 548370
Number of successful extensions: 1288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)