Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_I21
(661 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protei... 32 1.5
sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precur... 31 2.5
sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced prot... 30 4.3
sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA... 30 7.3
sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 29 9.5
sp|P24892|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4... 29 9.5
sp|Q6FP25|PEX22_CANGA Peroxisome assembly protein 22 (Perox... 29 9.5
>sp|P70617|NINJ1_RAT Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 32.0 bits (71), Expect = 1.5
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 113 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 292
SPG P A+ WGL P++ ++H K +++
Sbjct: 18 SPGSPDAS-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 293 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 454
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
>sp|Q07540|FRDA_YEAST Frataxin homolog, mitochondrial precursor [Contains: Frataxin
homolog intermediate form]
Length = 174
Score = 31.2 bits (69), Expect = 2.5
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 277 RQFSKASTDSD----ECLTTPDSSFVRESYFNSNDDYLDRFINNDDSKSNAFEN---DAE 435
++F ++STD E L P E Y DDYLD +++ + S A + D E
Sbjct: 49 KRFVESSTDGQVVPQEVLNLP-----LEKYHEEADDYLDHLLDSLEELSEAHPDCIPDVE 103
Query: 436 LQYSVPHPVNAISHTFVSDKSMPTEMKW 519
L + V T+V +K P + W
Sbjct: 104 LSHGVMTLEIPAFGTYVINKQPPNKQIW 131
>sp|O70131|NINJ1_MOUSE Ninjurin-1 (Nerve injury-induced protein 1)
Length = 152
Score = 30.4 bits (67), Expect = 4.3
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 113 SPGPPSATLC*QRAAVWGLSKSPLSQLILL*KPRIHFLIAIVAIISHQKLKVIEIVNLVK 292
SPG P A WGL P++ ++H K +++
Sbjct: 18 SPGSPDAL-----PPRWGLRNRPIN-------------------VNHYANKKSAAESMLD 53
Query: 293 LVLIVMSV*QLQIVVLSGNRIS--IPMMII*TVSLIMTIPSRMLLKMMPSCSIQYP 454
+ L++ + QL+ VV GN + +P++++ ++SL++ I +LL + + P
Sbjct: 54 IALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNP 109
>sp|P67569|SYR_MYCTU Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
sp|P67570|SYR_MYCBO Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 29.6 bits (65), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 316 LTTPDSSFVRESYFNSNDDYLDRFINN 396
LTT + VRE YFN + +DRF N+
Sbjct: 154 LTTQGADVVREYYFNDHGAQIDRFANS 180
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1
Length = 1956
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 331 SSFVRESYFNSNDDYLDRFINNDDSKSNAFEND 429
S V+ +Y N+NDD D NNDD ++ ND
Sbjct: 894 SVIVKSTYGNNNDDNNDDDNNNDDDNNDDNNND 926
>sp|P24892|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 409
Score = 29.3 bits (64), Expect = 9.5
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 293 LVLIVMSV*QLQIVVLS--GNRISIPMMII*TVSLIMTIPSRMLLKMMPSCSIQYPIPLM 466
++LIVMS+ L I+V+S N + I I+ + +I IPS M++ M +PI +M
Sbjct: 48 ILLIVMSLFILGIIVISEKNNNLLILSEILVFICIIFFIPSNMMMLYMFFELSMFPILVM 107
Query: 467 PL 472
L
Sbjct: 108 IL 109
>sp|Q6FP25|PEX22_CANGA Peroxisome assembly protein 22 (Peroxin-22)
Length = 174
Score = 29.3 bits (64), Expect = 9.5
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Frame = +1
Query: 358 NSNDDYLDRFINNDD--SKSNAFENDAELQYSVPHPVNAISHTFVSDKSMPTEMKWDYII 531
+S DD + +F DD ++ N + ++ ++ + S E+ WD I+
Sbjct: 30 HSEDDSVSKFNQQDDGTAQDNQIKEKPAIKLGKKRLHRSLCVIISNKLSNLVELDWDEIL 89
Query: 532 VEDIMLFSLPESAHKQKGFRD---------------GFVQFLDMLKMNELLMC 645
EDI+ LP S + + D G + LK NELL+C
Sbjct: 90 QEDIVFLILP-SVNDFQNSNDIKTDTHKIINCDTELGLWACVRTLKKNELLVC 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,846,109
Number of Sequences: 369166
Number of extensions: 1423702
Number of successful extensions: 3279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)