Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P11
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 82 2e-15
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 80 5e-15
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 75 2e-13
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 75 3e-13
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 74 3e-13
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 55 2e-07
sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) 49 1e-05
sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 36 0.10
sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1... 36 0.14
sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7... 35 0.23
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 81.6 bits (200), Expect = 2e-15
Identities = 52/191 (27%), Positives = 86/191 (45%)
Frame = +1
Query: 34 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYYL 213
GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG YH++
Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70
Query: 214 PTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSKFSS 393
P K Q + +++ A Y L ++ S + + FL+ +R +
Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130
Query: 394 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYSXXXXXXX 573
+ +YT SF N+N+D + Y LW+++Y K P W+ W +QYS
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEYGVKA-PKDNRVWSSWIGFQYSDKGNVAG 186
Query: 574 XXXXXDLNRLQ 606
D+N +
Sbjct: 187 VSGNCDMNEFK 197
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 80.5 bits (197), Expect = 5e-15
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 7/180 (3%)
Frame = +1
Query: 34 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYYL 213
GIDVSH G I+W+ VK AG SF +IK+++G +Y D F +N+ +A G YH+
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 214 PTVLYKT-QFDNIVRICSKVAAKPYAI--ALGVEDSAQGK----ISKAQYSDDIYSFLQL 372
P T Q D + + L +E + G +S Q I F
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 373 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 552
+++ + + IYT+ S+WN K WV+ + P +P + WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 75.5 bits (184), Expect = 2e-13
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Frame = +1
Query: 31 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVG 195
+GIDVS +IDW +V G F FIK+++G VDP F NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 196 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 375
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 376 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 552
+ IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 74.7 bits (182), Expect = 3e-13
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Frame = +1
Query: 31 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVG 195
+GIDVS +IDW +V G F FIK+++G VDP F NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 196 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 375
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 376 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 552
IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 74.3 bits (181), Expect = 3e-13
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Frame = +1
Query: 31 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVG 195
+GIDVS +IDW +V G F FIK+++G VDP F NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 196 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 375
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 376 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 552
IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 55.5 bits (132), Expect = 2e-07
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
Frame = +1
Query: 34 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYYL 213
GID+ G +D+ VK +G V+IK+++G +Y D + ++ A K+G YHY
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYHYLR 62
Query: 214 ---PTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSK 384
PT + F+ I + + A+ VE + I Q S ++ F L +K
Sbjct: 63 ANDPTSEAEHFFNTISGL-----SLDCKCAIDVEVTLGQSID--QISSNVRKFADYLINK 115
Query: 385 FSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDY 489
+ +YT +F+ DN++ D LW+++Y
Sbjct: 116 -GLDVCVYTYTNFYKDNLNSTVKDLP---LWIAEY 146
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH)
Length = 211
Score = 49.3 bits (116), Expect = 1e-05
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 10/183 (5%)
Frame = +1
Query: 34 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALK---NQFKVGVYH 204
G D+S + +++A AG FV IK+++G SY +P F S +N A N F G YH
Sbjct: 4 GFDISSYQPSVNFAGAYSAGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYH 63
Query: 205 YYLP-TVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGK------ISKAQYSDDIYSF 363
+ P Q D + + + ++ ++G +S A I +F
Sbjct: 64 FAHPGETTGAAQADYFIAHGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAF 123
Query: 364 LQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMW 543
+ + +YT+ S+W+ L +++ +PG W T+W
Sbjct: 124 SDRYHAVTGRYPMLYTNPSWWSSCTGNSNAFVNTNPLVLANRYASAPGTIPGGWPYQTIW 183
Query: 544 QYS 552
Q S
Sbjct: 184 QNS 186
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
Length = 339
Score = 36.2 bits (82), Expect = 0.10
Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Frame = +1
Query: 37 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYY-- 210
IDVS HNG ++ G + +K S+ +Y++P + ++ +G YH+
Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYHFARF 64
Query: 211 ---LPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 381
+ + QF V + + L ED G + ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPTQVKYLVLDYEDDPSG--NAQANTNACLRFMQMIAD 117
Query: 382 KFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY----TNKGQPYMPG-NWTKWTM 540
+ I+ Y+ K F DN+D+++ F LW++ Y N Y P + +W
Sbjct: 118 AGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSMDGIRW-- 173
Query: 541 WQYS 552
WQYS
Sbjct: 174 WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
Length = 339
Score = 35.8 bits (81), Expect = 0.14
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Frame = +1
Query: 37 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYY-- 210
+DVS HNG ++ G + IK S+ +Y++P + ++ +G YH+
Sbjct: 9 VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYHFARF 64
Query: 211 ---LPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 381
+ + QF V + + L ED G ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPMQVKYLVLDYEDDPSG--DAQANTNACLRFMQMIAD 117
Query: 382 KFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTM 540
I+ Y+ K F +DN+D+++ F LW++ Y N G Y P + +W
Sbjct: 118 AGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW-- 173
Query: 541 WQYS 552
WQYS
Sbjct: 174 WQYS 177
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin)
Length = 342
Score = 35.0 bits (79), Expect = 0.23
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Frame = +1
Query: 37 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMFVSNWNDALKNQFKVGVYHYYLP 216
+DV+ H G ++ AG + IK S+ SY++P + + +G YH+
Sbjct: 9 VDVASHQGYDISGILEEAGTTNTIIKVSESTSYLNPCLSAQ----VSQSNPIGFYHFACF 64
Query: 217 TVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSKFSSH 396
+ V + + L ED A + + + F+Q++ +
Sbjct: 65 GGNEEEAEAEARYFLDNVPTQVKYLVLDYEDHASASVQR--NTTACLRFMQMIAEAGYTP 122
Query: 397 IFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTMWQYS 552
I+ Y+ K F DN+D+++ F LW++ Y N G Y P + +W WQYS
Sbjct: 123 IY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW--WQYS 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,512,384
Number of Sequences: 369166
Number of extensions: 1712910
Number of successful extensions: 4029
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4016
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)