Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D01
(318 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7V511|PSAB_PROMM Photosystem I P700 chlorophyll a apopr... 29 3.8
sp|Q7U4E5|PSAB_SYNPX Photosystem I P700 chlorophyll a apopr... 29 3.8
sp|Q9R6T9|PSAB_SYNPW Photosystem I P700 chlorophyll a apopr... 29 3.8
sp|P09144|PSAB_CHLRE Photosystem I P700 chlorophyll a apopr... 28 5.0
sp|Q86XS8|GOLI_HUMAN Goliath homolog precursor (RING finger... 28 6.5
sp|Q8VEM1|GOLI_MOUSE Goliath homolog precursor (RING finger... 28 6.5
sp|Q6Y290|GOLI_RAT Goliath homolog precursor (RING finger p... 28 6.5
sp|Q43652|IP27_SOLTU Proteinase inhibitor type II CM7 precu... 28 8.5
sp|Q9RC07|PSAB_PROMP Photosystem I P700 chlorophyll a apopr... 28 8.5
sp|Q9U6A0|NCKX_DROME Sodium/potassium/calcium exchanger (Na... 28 8.5
>sp|Q7V511|PSAB_PROMM Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)
Length = 749
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 171 NYSAGIGQDPTFRHIWY 121
++S G+ QDPT R IWY
Sbjct: 7 SFSQGLAQDPTTRRIWY 23
>sp|Q7U4E5|PSAB_SYNPX Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)
Length = 737
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 171 NYSAGIGQDPTFRHIWY 121
++S G+ QDPT R IWY
Sbjct: 7 SFSQGLAQDPTTRRIWY 23
>sp|Q9R6T9|PSAB_SYNPW Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)
Length = 738
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 171 NYSAGIGQDPTFRHIWY 121
++S G+ QDPT R IWY
Sbjct: 7 SFSQGLAQDPTTRRIWY 23
>sp|P09144|PSAB_CHLRE Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B)
Length = 735
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 168 YSAGIGQDPTFRHIWY 121
+S G+ QDPT R IWY
Sbjct: 9 FSQGLAQDPTTRRIWY 24
>sp|Q86XS8|GOLI_HUMAN Goliath homolog precursor (RING finger protein 130)
Length = 419
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 4 ARGNLKFLKISFIFEFLINVILSIMWLAAFIDLNVKWTN 120
+RG+L F+ ISFI + +I+S WL + +++TN
Sbjct: 191 SRGSLVFVSISFI----VLMIISSAWLIFYFIQKIRYTN 225
>sp|Q8VEM1|GOLI_MOUSE Goliath homolog precursor (RING finger protein 130) (G1-related
zinc finger protein)
Length = 419
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 4 ARGNLKFLKISFIFEFLINVILSIMWLAAFIDLNVKWTN 120
+RG+L F+ ISFI + +I+S WL + +++TN
Sbjct: 191 SRGSLVFVSISFI----VLMIISSAWLIFYFIQKIRYTN 225
>sp|Q6Y290|GOLI_RAT Goliath homolog precursor (RING finger protein 130) (R-goliath)
Length = 419
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 4 ARGNLKFLKISFIFEFLINVILSIMWLAAFIDLNVKWTN 120
+RG+L F+ ISFI + +I+S WL + +++TN
Sbjct: 191 SRGSLVFVSISFI----VLMIISSAWLIFYFIQKIRYTN 225
>sp|Q43652|IP27_SOLTU Proteinase inhibitor type II CM7 precursor
Length = 154
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Frame = +3
Query: 120 CTKYAGKLGPGQCPRC-----NFICVFC 188
CTK G LG G CPR N IC+ C
Sbjct: 34 CTKECGNLGFGICPRSEGSPKNPICINC 61
>sp|Q9RC07|PSAB_PROMP Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)
Length = 742
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 171 NYSAGIGQDPTFRHIWY 121
+++ G+ QDPT R IWY
Sbjct: 7 SFNQGLAQDPTTRRIWY 23
>sp|Q9U6A0|NCKX_DROME Sodium/potassium/calcium exchanger (Na(+)/K(+)/Ca(2+)-exchange
protein)
Length = 856
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 49 FLINVILSIMWLAAFIDLNVKWTNV 123
F + I SI+W+AAF L V W NV
Sbjct: 697 FPVTFIGSIVWIAAFSYLMVWWANV 721
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,505,140
Number of Sequences: 369166
Number of extensions: 633219
Number of successful extensions: 1698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)