Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L07
(886 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 112 1e-24
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 108 2e-23
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 108 2e-23
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 107 3e-23
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 107 4e-23
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 106 8e-23
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 106 8e-23
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 106 8e-23
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 106 1e-22
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 105 2e-22
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 112 bits (280), Expect = 1e-24
Identities = 56/106 (52%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Frame = +1
Query: 169 NKP-KEENEAYSEAPASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIK 345
N+P +E+NE E K+++ + V G VKWFNVK GYGF+ R+D ED+F+H +AI+K
Sbjct: 13 NQPDQEQNEEQKE-----KKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVK 67
Query: 346 GNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
NP +SV DGE + FDVV+G KG+EAANV G +GS V+GS+YA
Sbjct: 68 NNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 108 bits (271), Expect = 2e-23
Identities = 57/99 (57%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Frame = +1
Query: 199 SEAPA----SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPR 366
S APA + K+VL T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP
Sbjct: 65 SSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 124
Query: 367 KSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
+SV DGE + FDVV+G KG EAANV G DG V+GS YA
Sbjct: 125 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 108 bits (271), Expect = 2e-23
Identities = 57/99 (57%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Frame = +1
Query: 199 SEAPA----SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPR 366
S APA + K+VL T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP
Sbjct: 65 SSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 124
Query: 367 KSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
+SV DGE + FDVV+G KG EAANV G DG V+GS YA
Sbjct: 125 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 107 bits (268), Expect = 3e-23
Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Frame = +1
Query: 175 PKEENEAYSEAPA-------SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHS 333
P+ E+E + P + K+VL T VQG VKWFNV+ GYGF+ RND ED+F+H +
Sbjct: 13 PQPESEPEIQKPGIAAARNQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQT 72
Query: 334 AIIKGNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
AI K NP +SV DGE + FDVV+G KG EAANV G G VKGS +A
Sbjct: 73 AIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 107 bits (267), Expect = 4e-23
Identities = 53/88 (60%), Positives = 63/88 (71%)
Frame = +1
Query: 220 KEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDGEDILF 399
K+VL T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP +SV DGE + F
Sbjct: 84 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 143
Query: 400 DVVKGIKGDEAANVCGIDGSYVKGSEYA 483
DVV+G KG EAANV G DG V+GS YA
Sbjct: 144 DVVEGEKGAEAANVTGPDGVPVEGSRYA 171
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 106 bits (265), Expect = 8e-23
Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 6/103 (5%)
Frame = +1
Query: 205 APASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDG 384
A K+V+ T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP +SV DG
Sbjct: 25 ATVGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDG 84
Query: 385 EDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
E + FDVV+G KG EAANV G +G V+GS+YA RYP
Sbjct: 85 ETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 106 bits (265), Expect = 8e-23
Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 7/106 (6%)
Frame = +1
Query: 199 SEAPAS-PKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSV 375
S APA K+V+ T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP +SV
Sbjct: 42 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 101
Query: 376 EDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
DGE + FDVV+G KG EAANV G G V+GS+YA RYP
Sbjct: 102 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 106 bits (265), Expect = 8e-23
Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 7/106 (6%)
Frame = +1
Query: 199 SEAPAS-PKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSV 375
S APA K+V+ T V G VKWFNV+ GYGF+ RND ED+F+H +AI K NP +SV
Sbjct: 44 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 103
Query: 376 EDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
DGE + FDVV+G KG EAANV G G V+GS+YA RYP
Sbjct: 104 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 149
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 106 bits (264), Expect = 1e-22
Identities = 52/88 (59%), Positives = 64/88 (72%)
Frame = +1
Query: 220 KEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDGEDILF 399
K++L T VQG VKWFNV+ GYGF+ RND+ ED+F+H +AI K NP +SV DGE + F
Sbjct: 35 KKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEF 94
Query: 400 DVVKGIKGDEAANVCGIDGSYVKGSEYA 483
DVV+G KG EAANV G G VKGS +A
Sbjct: 95 DVVEGEKGAEAANVTGPGGVPVKGSRFA 122
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 105 bits (261), Expect = 2e-22
Identities = 58/123 (47%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Frame = +1
Query: 145 DFKSNYTSNKPKEENEAYSEAPASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFI 324
D K N S + + K+V+ T V G VKWFNV+ GYGF+ RND ED+F+
Sbjct: 24 DSKPNGGSGNGSSGLASAAPPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFV 83
Query: 325 HHSAIIKGNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------ 486
H +AI K NP +SV DGE + FDVV+G KG EAANV G G V+GS+YA
Sbjct: 84 HQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYR 143
Query: 487 RYP 495
RYP
Sbjct: 144 RYP 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,840,756
Number of Sequences: 369166
Number of extensions: 1642485
Number of successful extensions: 4983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4948
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)