Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_O24
(146 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 84 1e-16
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 83 2e-16
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 83 2e-16
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 83 2e-16
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 83 2e-16
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 79 3e-15
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 77 1e-14
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 77 1e-14
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 76 2e-14
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 76 2e-14
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 83.6 bits (205), Expect = 1e-16
Identities = 32/43 (74%), Positives = 40/43 (93%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 144
+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 178 IKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 83.2 bits (204), Expect = 2e-16
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 144
+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 178 IKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 83.2 bits (204), Expect = 2e-16
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 144
+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 178 IKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 83.2 bits (204), Expect = 2e-16
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 144
+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 178 IKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 82.8 bits (203), Expect = 2e-16
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 141
+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 178 IKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 79.0 bits (193), Expect = 3e-15
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 141
+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 178 IKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 77.0 bits (188), Expect = 1e-14
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 141
+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 178 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 77.0 bits (188), Expect = 1e-14
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGW 126
+KKVGY P VAFVPISGW+GDNM+EESTNMPWYKGW
Sbjct: 176 IKKVGYNPKTVAFVPISGWHGDNMLEESTNMPWYKGW 212
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 76.3 bits (186), Expect = 2e-14
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 141
+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 164 IKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 76.3 bits (186), Expect = 2e-14
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 16 LKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 141
+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 164 IKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.135 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,723,899
Number of Sequences: 369166
Number of extensions: 287149
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)