Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M04
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05997|CO5A2_HUMAN Collagen alpha 2(V) chain precursor 84 3e-16
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 79 1e-14
sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor ... 78 1e-14
sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor 78 1e-14
sp|P20909|CA1B_RAT Collagen alpha 1(XI) chain precursor 78 2e-14
sp|P02461|CO3A1_HUMAN Collagen alpha 1(III) chain precursor 77 2e-14
sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor 77 3e-14
sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor 77 4e-14
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 77 4e-14
sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor ... 77 4e-14
>sp|P05997|CO5A2_HUMAN Collagen alpha 2(V) chain precursor
Length = 1496
Score = 83.6 bits (205), Expect = 3e-16
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 19/132 (14%)
Frame = +3
Query: 156 DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKERKTCIKS 335
+ + PDG++ PARTC L + + + G YWIDPN G ++DA++VYC ++ +TCI +
Sbjct: 1277 ETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMETGETCISA 1336
Query: 336 IYRETSLEKPRFNWY-SQGNDNKFINYALDQQ------------------QLTFLKMISN 458
PR W+ S+ DNK + Y LD Q+TFL+++S
Sbjct: 1337 ----NPSSVPRKTWWASKSPDNKPVWYGLDMNRGSQFAYGDHQSPNTAITQMTFLRLLSK 1392
Query: 459 KASQFVTINCQN 494
+ASQ +T C+N
Sbjct: 1393 EASQNITYICKN 1404
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 78.6 bits (192), Expect = 1e-14
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 27/158 (17%)
Frame = +3
Query: 102 GYMIIQADQPTI-AKYLGNDA-----------ITQPDGTQNLPARTCLHLAEINPSFKDG 245
GY +ADQP+ AK DA + P+G++ PARTC + +P + G
Sbjct: 1107 GYDEYRADQPSFRAKDYEVDATIKSLNSQIENLLTPEGSKKNPARTCRDIRLSHPDWSSG 1166
Query: 246 LYWIDPNGGKIDDAVQVYCKIKERKTCI----KSIYRET---SLEKPRFNWYSQ----GN 392
YWIDPN G I DA++ YC TCI +SI R+ S E + W+ + G
Sbjct: 1167 FYWIDPNQGCIADAIKAYCDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGT 1226
Query: 393 DNKFINYALDQQ----QLTFLKMISNKASQFVTINCQN 494
+ + + L Q QL F+++++N+A+Q +T +C+N
Sbjct: 1227 EFAYNDETLSPQSMATQLAFMRLLANQATQNITYHCKN 1264
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1418
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Frame = +3
Query: 120 ADQPTIAKYLGN--DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQ 293
A+ K L N ++I P+G++ PARTC L +P +K G YWIDPN G DA++
Sbjct: 1184 AEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMK 1243
Query: 294 VYCKIKERKTCI---------KSIYRETSLEKPRFNW----------YSQGNDNKFINYA 416
V+C ++ +TC+ K+ + S EK W +S G+DN N A
Sbjct: 1244 VFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHI-WFGETINGGFHFSYGDDNLAPNTA 1302
Query: 417 LDQQQLTFLKMISNKASQFVTINCQN 494
Q+TFL+++S + SQ +T +C+N
Sbjct: 1303 --NVQMTFLRLLSTEGSQNITYHCKN 1326
>sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor
Length = 1355
Score = 78.2 bits (191), Expect = 1e-14
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Frame = +3
Query: 156 DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKERKTCI-- 329
+ I P+G++ PARTC L +P + G YWIDPN G DA++V+C +TCI
Sbjct: 1134 EVILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDAIRVFCDFSSGETCIHA 1193
Query: 330 -------KSIYRETSLEKPRFNWYSQ----GNDNKFINYALDQQ----QLTFLKMISNKA 464
K+ Y TS + + W+ + G ++ + L + QL F+++++N+A
Sbjct: 1194 NPDEITQKNWYINTSNKDKKHLWFGEILNGGTQFEYHDEGLTAKDMATQLAFMRLLANQA 1253
Query: 465 SQFVTINCQN 494
SQ +T +C+N
Sbjct: 1254 SQNITYHCKN 1263
>sp|P20909|CA1B_RAT Collagen alpha 1(XI) chain precursor
Length = 482
Score = 77.8 bits (190), Expect = 2e-14
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Frame = +3
Query: 171 PDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKE-RKTCIKSIYRE 347
P GTQ PARTC L +P F DG YWIDPN G D+ +VYC +TCI +
Sbjct: 272 PMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKS 331
Query: 348 TSL-------EKPRFNWYSQGNDNKFINY------ALDQQQLTFLKMISNKASQFVTINC 488
+ EKP +WYS+ K ++Y +++ Q+TFLK++++ A Q T NC
Sbjct: 332 EGVRLSSWPKEKPG-SWYSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTSSARQNFTYNC 390
Query: 489 QN----MPIIKNSV-KPLRIFTDND 548
++ S K LR ND
Sbjct: 391 HQSTAWYDVLSGSYDKALRFLGSND 415
>sp|P02461|CO3A1_HUMAN Collagen alpha 1(III) chain precursor
Length = 1466
Score = 77.4 bits (189), Expect = 2e-14
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 17/130 (13%)
Frame = +3
Query: 156 DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKERKTCI-- 329
+++ PDG++ PAR C L +P K G YW+DPN G DA++V+C ++ +TCI
Sbjct: 1246 ESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISA 1305
Query: 330 -------KSIYRETSLEKPRFNWYSQGNDNKF-INYALDQ-------QQLTFLKMISNKA 464
K + ++S EK + W+ + D F +Y + QL FL+++S++A
Sbjct: 1306 NPLNVPRKHWWTDSSAEK-KHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSRA 1364
Query: 465 SQFVTINCQN 494
SQ +T +C+N
Sbjct: 1365 SQNITYHCKN 1374
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
Length = 369
Score = 77.0 bits (188), Expect = 3e-14
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 20/133 (15%)
Frame = +3
Query: 156 DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKERKTCIKS 335
++I P+G++ PARTC + +P +K G YWIDPN G DA++V+C ++ +TC+
Sbjct: 149 ESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCV-- 206
Query: 336 IYRETSLEKPRFNWY-SQGNDNKFINYA-------------------LDQQQLTFLKMIS 455
T PR NW+ S+ D K + +A Q+TFL+++S
Sbjct: 207 --YPTPSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLSPNTASIQMTFLRLLS 264
Query: 456 NKASQFVTINCQN 494
+ SQ VT +C+N
Sbjct: 265 TEGSQNVTYHCKN 277
>sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor
Length = 1804
Score = 76.6 bits (187), Expect = 4e-14
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Frame = +3
Query: 171 PDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKE-RKTCIKSIYRE 347
P GTQ PARTC L +P F DG YWIDPN G D+ +VYC +TCI +
Sbjct: 1594 PMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKS 1653
Query: 348 TSL-------EKPRFNWYSQGNDNKFINY------ALDQQQLTFLKMISNKASQFVTINC 488
+ EKP +WYS+ K ++Y +++ Q+TFLK+++ A Q T NC
Sbjct: 1654 EGVRISSWPKEKPG-SWYSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYNC 1712
Query: 489 QN----MPIIKNSV-KPLRIFTDND 548
++ S K LR ND
Sbjct: 1713 HQSAAWYDVLSGSYDKALRFLGSND 1737
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 76.6 bits (187), Expect = 4e-14
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 21/155 (13%)
Frame = +3
Query: 93 RPQGYMIIQADQPTIAKYLGN--DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPN 266
RP+ Y + K L N + + P+G++ PARTC L +P + G YWIDPN
Sbjct: 289 RPKDYEV-----DATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPN 343
Query: 267 GGKIDDAVQVYCKIKERKTCIKSIYRETSLEKPRFNWYSQGNDNKFI------------N 410
G DA++VYC +TCI++ S++ NWY K +
Sbjct: 344 QGCTMDAIKVYCDFSTGETCIRAQPENISVK----NWYKSSKAKKHVWLGETINGGTQFE 399
Query: 411 YALD-------QQQLTFLKMISNKASQFVTINCQN 494
Y ++ QL F+++++N ASQ +T +C+N
Sbjct: 400 YNVEGVTSKEMATQLAFMRLLANHASQNITYHCKN 434
>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1459
Score = 76.6 bits (187), Expect = 4e-14
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 19/132 (14%)
Frame = +3
Query: 156 DAITQPDGTQNLPARTCLHLAEINPSFKDGLYWIDPNGGKIDDAVQVYCKIKERKTCI-- 329
++I PDG++ PARTC L +P +K G YWIDPN G DA++V+C ++ +TC+
Sbjct: 1239 ESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYP 1298
Query: 330 -------KSIYRETSLEKPRFNW----------YSQGNDNKFINYALDQQQLTFLKMISN 458
K+ + S EK W +S G+ N N A Q+TFL+++S
Sbjct: 1299 NPATVPRKNWWSSKSKEKKHI-WFGETMNGGFHFSYGDGNLAPNTA--NVQMTFLRLLST 1355
Query: 459 KASQFVTINCQN 494
+ SQ +T +C+N
Sbjct: 1356 EGSQNITYHCKN 1367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,774,401
Number of Sequences: 369166
Number of extensions: 1131530
Number of successful extensions: 2721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)