Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L06
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 238 1e-62
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 236 4e-62
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 235 6e-62
sp|P24050|RS5_RAT 40S ribosomal protein S5 232 4e-61
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 229 3e-60
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 226 2e-59
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 223 3e-58
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 214 9e-56
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 214 2e-55
sp|O65731|RS5_CICAR 40S ribosomal protein S5 213 2e-55
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 238 bits (606), Expect = 1e-62
Identities = 119/168 (70%), Positives = 134/168 (79%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 26 DDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGK 85
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLR
Sbjct: 86 KLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLR 145
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREA+FRN +TIAECL+DELINA+KGSSNSYAI KK
Sbjct: 146 RVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 236 bits (601), Expect = 4e-62
Identities = 118/168 (70%), Positives = 133/168 (79%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 26 DDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGK 85
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLR
Sbjct: 86 KLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLR 145
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREA+FRN + IAECL+DELINA+KGSSNSYAI KK
Sbjct: 146 RVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKK 193
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 235 bits (599), Expect = 6e-62
Identities = 116/168 (69%), Positives = 135/168 (80%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CSLMM GR
Sbjct: 50 DDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGK 109
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLR
Sbjct: 110 KLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLR 169
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREA+FRN +TIAECL+DELINA+KGSSNSYAI KK
Sbjct: 170 RVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 217
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 232 bits (592), Expect = 4e-61
Identities = 117/168 (69%), Positives = 131/168 (77%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVER S+MMHGR
Sbjct: 26 DDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGK 85
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLR
Sbjct: 86 KLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLR 145
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREA+FRN +TIAECL+DELINA KGSSNSYAI KK
Sbjct: 146 RVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKK 193
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 229 bits (585), Expect = 3e-60
Identities = 114/168 (67%), Positives = 135/168 (80%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+ V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMMHGR
Sbjct: 32 QSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGK 91
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQAVDV+PLR
Sbjct: 92 KLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQAVDVAPLR 151
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREA+FRN +TIAECL+DELINA+KGSSNSYAI KK
Sbjct: 152 RVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKK 199
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 226 bits (577), Expect = 2e-59
Identities = 112/168 (66%), Positives = 131/168 (77%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
+D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER LMM GR
Sbjct: 52 DDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGK 111
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLR
Sbjct: 112 KLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLR 171
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI L+CTGAREA+FRN +T+AECL+DELINA+KGSSNSYAI KK
Sbjct: 172 RVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKK 219
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 223 bits (568), Expect = 3e-58
Identities = 111/168 (66%), Positives = 132/168 (78%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXX 180
E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER SLMMHGR
Sbjct: 32 EGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGK 91
Query: 181 XXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLR 360
H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQAVDV+PLR
Sbjct: 92 KLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQAVDVAPLR 151
Query: 361 RVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RVN+AI LLCTGAREASFRN ++IAECL+DELINA++GSSNSYAI KK
Sbjct: 152 RVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKK 199
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 214 bits (546), Expect = 9e-56
Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXX 177
+DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 28 DDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNG 87
Query: 178 XXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPL 357
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPL
Sbjct: 88 KKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPL 147
Query: 358 RRVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RRVN+AI LL TGAREA+FRN +TIAECL+DELINA+KGSSNSYAI KK
Sbjct: 148 RRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 214 bits (544), Expect = 2e-55
Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXX 177
+DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 28 DDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNG 87
Query: 178 XXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPL 357
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPL
Sbjct: 88 KKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPL 147
Query: 358 RRVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RRVN+AI L+ TGAREA+FRN +TIAECL+DELINA+KGSSNSYAI KK
Sbjct: 148 RRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 213 bits (543), Expect = 2e-55
Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 EDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXX 177
+DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 18 DDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNG 77
Query: 178 XXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPL 357
HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+RQAVD+SPL
Sbjct: 78 KKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQAVDISPL 137
Query: 358 RRVNKAISLLCTGAREASFRNSQTIAECLSDELINASKGSSNSYAINKK 504
RRVN+AI LL TGAREA+FRN ++IAECL+DELINA+KGSSNSYAI KK
Sbjct: 138 RRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKK 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,990,084
Number of Sequences: 369166
Number of extensions: 985561
Number of successful extensions: 2591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2573
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)