Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N09
(547 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 ... 52 9e-07
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 ... 50 5e-06
sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation fact... 45 9e-05
sp|O75821|IF34_HUMAN Eukaryotic translation initiation fact... 45 9e-05
sp|Q24207|BOULE_DROME Boule protein 45 9e-05
sp|Q8N9W6|BOLL_HUMAN Boule-like protein 44 3e-04
sp|Q99181|HSH49_YEAST HSH49 protein 44 3e-04
sp|Q8WP23|BOLL_MACFA Boule-like protein 44 3e-04
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 43 4e-04
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 43 4e-04
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog
Length = 300
Score = 52.0 bits (123), Expect = 9e-07
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +3
Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329
DP T+FI + E++LQ F+ E + IR+++D I+ SK YAF+ F +
Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKM 163
Query: 330 ALEKLGNY--VILRDKRLIVEMELERILINWKP 422
A +++G + + ++D+ IV++E R + +KP
Sbjct: 164 AFKEIGVHRGIQIKDRICIVDIERGRTVKYFKP 196
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 427
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Frame = +3
Query: 120 EYRPNK--GVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYA 293
+Y PN GDP TLF++ + E+ E ++ F + K + ++ D ++ K YA
Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
Query: 294 FVEFHSKQDAYYALEKLGNYVILRDKRLIVEMELERILINWKP 422
F+E+ +D A ++ I +R++V++E R + NW+P
Sbjct: 183 FIEYMHTRDMKAAYKQADGQKI-DGRRVLVDVERGRTVPNWRP 224
>sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
(eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
(Eif3p42) (eIF3g)
Length = 320
Score = 45.4 bits (106), Expect = 9e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305
+PN+ D +T+ + +TRE DLQ LF I + +D +G SK +AF+ F
Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
Query: 306 HSKQDAYYALEKLGNY 353
H ++DA A+ + +
Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|O75821|IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
(eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
(eIF3g)
Length = 320
Score = 45.4 bits (106), Expect = 9e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305
+PN+ D +T+ + +TRE DLQ LF I + +D +G SK +AF+ F
Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
Query: 306 HSKQDAYYALEKLGNY 353
H ++DA A+ + +
Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|Q24207|BOULE_DROME Boule protein
Length = 228
Score = 45.4 bits (106), Expect = 9e-05
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +3
Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALEKL 344
+F+ G +T E DL +F K ++I D +G+SK Y FV F ++Q+A L+
Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEA-QRLQAD 92
Query: 345 GNYVILRDKRLIVEMELER 401
G V+LRD++L + +++
Sbjct: 93 GECVVLRDRKLNIAPAIKK 111
>sp|Q8N9W6|BOLL_HUMAN Boule-like protein
Length = 283
Score = 43.5 bits (101), Expect = 3e-04
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335
+F+ G D +T E DL+ F K ++++ D +G+SK Y FV F +++DA L
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93
Query: 336 EKLGNYVILRDKRL 377
EKL NY +DK+L
Sbjct: 94 EKL-NY---KDKKL 103
>sp|Q99181|HSH49_YEAST HSH49 protein
Length = 213
Score = 43.5 bits (101), Expect = 3e-04
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +3
Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329
D +T+++ D + L LFI I I+ +D + + YAF+EF+++ DA Y
Sbjct: 6 DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65
Query: 330 ALEKLGNYVILRDKRLIV 383
A++ + N V L D+ + V
Sbjct: 66 AIKIMNNTVRLYDRLIKV 83
>sp|Q8WP23|BOLL_MACFA Boule-like protein
Length = 283
Score = 43.5 bits (101), Expect = 3e-04
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335
+F+ G D +T E DL+ F K ++++ D +G+SK Y FV F +++DA L
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93
Query: 336 EKLGNYVILRDKRL 377
EKL NY +DK+L
Sbjct: 94 EKL-NY---KDKKL 103
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 43.1 bits (100), Expect = 4e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +3
Query: 159 STLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALE 338
++L++ D E L LF +I IRV RD ++ S YA+V FH+ +D AL+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 339 KLGNYVILRDK 371
+L NY +++ +
Sbjct: 140 EL-NYTLIKGR 149
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
5)
Length = 668
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +3
Query: 153 PKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYA 332
P S+L++ D E L +LF + +RV RDL S YA+V F + +DA A
Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHR-SLGYAYVNFANPEDASRA 101
Query: 333 LEKLGNYVILRDK 371
+E L NY +RD+
Sbjct: 102 MESL-NYAPIRDR 113
Score = 38.1 bits (87), Expect = 0.014
Identities = 29/94 (30%), Positives = 46/94 (48%)
Frame = +3
Query: 102 IRALYSEYRPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGIS 281
IR + S P+ + G K +FI D L F + +V D++ G S
Sbjct: 115 IRIMLSNRDPSTRLSG--KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRS 171
Query: 282 KQYAFVEFHSKQDAYYALEKLGNYVILRDKRLIV 383
K Y FV+F ++ A A++KL N ++L DK++ V
Sbjct: 172 KGYGFVQFEKEETAQAAIDKL-NGMLLNDKQVFV 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,595,788
Number of Sequences: 369166
Number of extensions: 1096185
Number of successful extensions: 2992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2985
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)