Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J23
(578 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor 81 2e-15
sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor 80 4e-15
sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor ... 78 1e-14
sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor 78 1e-14
sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor 77 2e-14
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 77 4e-14
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 77 4e-14
sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor ... 76 5e-14
sp|P18856|CAF1_EPHMU Collagen EMF1-alpha precursor (Fibrill... 76 7e-14
sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor 75 2e-13
>sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor
Length = 1355
Score = 81.3 bits (199), Expect = 2e-15
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Frame = +2
Query: 62 FPGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDANAAK 241
F G GPPGP G PG GP P R +D D +
Sbjct: 1076 FTGPAGPPGPPGPPGHAGPSGGGYDGGDGGEYYRADQ-----PERK-PKDYEVDATLKSL 1129
Query: 242 YLGSDIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQTKET 421
++I P G+++ PARTC+ L S+P + G+Y+IDPN G +DA++V C F + ET
Sbjct: 1130 NQQIEVILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDAIRVFCDFSSGET 1189
Query: 422 CIDPKSSHYELKNW-IDEASEDQSWCW 499
CI KNW I+ +++D+ W
Sbjct: 1190 CIHANPDEITQKNWYINTSNKDKKHLW 1216
Score = 31.2 bits (69), Expect = 1.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG NG PGP GL G GP
Sbjct: 879 PGSNGEPGPSGLAGSSGP 896
Score = 30.0 bits (66), Expect = 4.3
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Frame = +2
Query: 68 GDNGPPG---PIGLPGRDG 115
GD GPPG P G+PGRDG
Sbjct: 31 GDKGPPGEQGPPGIPGRDG 49
Score = 29.6 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDG 115
PG+ GP GP G PG+DG
Sbjct: 792 PGNVGPSGPTGHPGKDG 808
Score = 28.9 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDG 115
PG++GPPG GLPG G
Sbjct: 921 PGNDGPPGRDGLPGAKG 937
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
Length = 369
Score = 80.1 bits (196), Expect = 4e-15
Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDAN---- 232
PG GPPG G PG GP P+R +R D A
Sbjct: 78 PGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPD--PIRYMRADEAAGGLRQHDV 135
Query: 233 ----AAKYLGSDI--IKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKV 394
K L + I I+ P G+++ PARTC+ + +P + G Y+IDPN G DA+KV
Sbjct: 136 EVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKV 195
Query: 395 LCHFQTKETCIDPKSSHYELKNWIDEASEDQSWCW 499
C+ +T ETC+ P S KNW ++D+ W
Sbjct: 196 FCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVW 230
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1418
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLAD-----DA 229
PG+ GPPGP G PG + P++ +R D A DA
Sbjct: 1133 PGNPGPPGPPGPPGPGIDMSAFAGLGpreKGPD--------PLQYMRADQAAGGLRQHDA 1184
Query: 230 NAAKYLGS-----DIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKV 394
L S + I+ P G+++ PARTC+ L +P + G Y+IDPN G DA+KV
Sbjct: 1185 EVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKV 1244
Query: 395 LCHFQTKETCIDPKSSHYELKNWIDEASEDQSWCW 499
C+ +T ETC+ P ++ KNW S+++ W
Sbjct: 1245 FCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIW 1279
Score = 33.1 bits (74), Expect = 0.51
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
GD GPPGP+G PG GP
Sbjct: 945 GDRGPPGPVGPPGLTGP 961
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
G+ GPPGP G G+DGP
Sbjct: 843 GNPGPPGPPGPSGKDGP 859
Score = 28.9 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
GD+GPPG G PG GP
Sbjct: 864 GDSGPPGRAGEPGLQGP 880
>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
Length = 1364
Score = 78.2 bits (191), Expect = 1e-14
Identities = 46/132 (34%), Positives = 62/132 (46%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDANAAKYL 247
G GPPGP G PG GP + +R +D D +
Sbjct: 1085 GPAGPPGPPGPPGPPGPSGGGYEFGFDGDFYRADQPRSPTSLRP--KDYEVDATLKSLNN 1142
Query: 248 GSDIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQTKETCI 427
+ + P G+++ PARTC+ L S+P + GYY+IDPN G DA+KV C F T ETCI
Sbjct: 1143 QIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 1202
Query: 428 DPKSSHYELKNW 463
+ +KNW
Sbjct: 1203 RAQPEDIPVKNW 1214
>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
Length = 1366
Score = 77.4 bits (189), Expect = 2e-14
Identities = 46/132 (34%), Positives = 62/132 (46%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDANAAKYL 247
G GPPGP G PG GP + +R +D D +
Sbjct: 1087 GPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRP--KDYEVDATLKSLNN 1144
Query: 248 GSDIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQTKETCI 427
+ + P G+++ PARTC+ L S+P + GYY+IDPN G DA+KV C F T ETCI
Sbjct: 1145 QIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 1204
Query: 428 DPKSSHYELKNW 463
+ + KNW
Sbjct: 1205 RAQPENIPAKNW 1216
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG G PG GLPG DGP
Sbjct: 396 PGLRGSPGSRGLPGADGP 413
Score = 29.3 bits (64), Expect = 7.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 62 FPGDNGPPGPIGLPGRDGPI 121
+PG+ GP G +G PG GP+
Sbjct: 950 YPGNIGPVGAVGAPGPHGPV 969
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 76.6 bits (187), Expect = 4e-14
Identities = 47/144 (32%), Positives = 67/144 (46%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDANAAKYL 247
G GPPGP G PG G + P +D D +
Sbjct: 250 GPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRP-----KDYEVDATLKSLNN 304
Query: 248 GSDIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQTKETCI 427
+ + P G+++ PARTC+ L S+P + GYY+IDPN G DA+KV C F T ETCI
Sbjct: 305 QIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 364
Query: 428 DPKSSHYELKNWIDEASEDQSWCW 499
+ + +KNW ++S+ + W
Sbjct: 365 RAQPENISVKNWY-KSSKAKKHVW 387
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 76.6 bits (187), Expect = 4e-14
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDMLADDANA--- 235
PG GP GP G PG GP + R + A D
Sbjct: 1077 PGHLGPAGPPGSPGLPGPAGPAGGGYDQSGG--------YDEYRADQPSFRAKDYEVDAT 1128
Query: 236 AKYLGSDI--IKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQ 409
K L S I + P G+++ PARTC+ + S+P++ G+Y+IDPN G + DA+K C F
Sbjct: 1129 IKSLNSQIENLLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADAIKAYCDFS 1188
Query: 410 TKETCIDPKSSHYELKNWIDEASEDQSWCW 499
T TCI P KNW +SE++ W
Sbjct: 1189 TGHTCIHPHPESIARKNWY-RSSENKKHVW 1217
Score = 30.8 bits (68), Expect = 2.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG GPPG GL GR GP
Sbjct: 456 PGKEGPPGAAGLDGRTGP 473
>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1459
Score = 76.3 bits (186), Expect = 5e-14
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPV----RTIRRDMLADDAN 232
PG GPPGP PG GP ++ T+R+ + DA
Sbjct: 1174 PGSPGPPGP---PGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADSTLRQHDVEVDAT 1230
Query: 233 AAKYLGSDI--IKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHF 406
K L + I I+ P G+++ PARTC+ L +P + G Y+IDPN G DA+KV C+
Sbjct: 1231 L-KSLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNM 1289
Query: 407 QTKETCIDPKSSHYELKNWIDEASEDQSWCW 499
+T ETC+ P + KNW S+++ W
Sbjct: 1290 ETGETCVYPNPATVPRKNWWSSKSKEKKHIW 1320
Score = 33.1 bits (74), Expect = 0.51
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
GD GPPGP+G PG GP
Sbjct: 986 GDRGPPGPVGPPGLTGP 1002
Score = 29.6 bits (65), Expect = 5.6
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 62 FPGDNGPPGPIGLPGRDGP 118
FPG GPPGP G G GP
Sbjct: 405 FPGPRGPPGPQGATGPLGP 423
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDG 115
G GPPGP G PG DG
Sbjct: 212 GPRGPPGPAGKPGDDG 227
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
GD+GPPG G PG +GP
Sbjct: 905 GDSGPPGRAGDPGLEGP 921
Score = 28.9 bits (63), Expect = 9.6
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Frame = +2
Query: 65 PGDNGPPGPIGL---PGRDG 115
PG+ GPPGP G PG DG
Sbjct: 796 PGETGPPGPAGFAGPPGADG 815
Score = 28.9 bits (63), Expect = 9.6
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Frame = +2
Query: 65 PGDNGPPGPIGLP---GRDGP 118
PG NG PGP G P G+DGP
Sbjct: 880 PGANGNPGPAGPPGPAGKDGP 900
Score = 28.9 bits (63), Expect = 9.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDG 115
G GPPGP+G G+DG
Sbjct: 1133 GPRGPPGPVGPSGKDG 1148
>sp|P18856|CAF1_EPHMU Collagen EMF1-alpha precursor (Fibrillar collagen)
Length = 547
Score = 75.9 bits (185), Expect = 7e-14
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFVPVRTIRRDM----LADDANA 235
G GP GP G PG G + F + D+ +AD
Sbjct: 293 GSTGPAGPPGPPGPTGGGIILVPVNDQNPTRSPVSGSVFYRGQAEETDVNLGSVADVIEL 352
Query: 236 AKYLGSDIIKKPLGTQELPARTCKHLFDSNPNFIDGYYYIDPNGGKVNDAVKVLCHFQ-- 409
K L +K P GT++ PAR+C LF + + DGYY+IDPNGG + DAVKV C+F
Sbjct: 353 HKKLQH--LKSPTGTKDSPARSCHDLFLEDNSTSDGYYWIDPNGGCIGDAVKVFCNFTGG 410
Query: 410 TKETCIDPKSSHYELKNW 463
++TCI + +LK+W
Sbjct: 411 VQQTCISATKNAGDLKSW 428
>sp|P20908|CA15_HUMAN Collagen alpha 1(V) chain precursor
Length = 1838
Score = 74.7 bits (182), Expect = 2e-13
Identities = 55/166 (33%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGPIXXXXXXXXXXXXXXXXXXATFV---PV------RTIRRDML 217
PG GPPGP G G GP + P+ R I L
Sbjct: 1533 PGLPGPPGPKGAKGSSGPTGPRGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQL 1592
Query: 218 ADDANAAKYL----------GS--------DIIKKPLGTQELPARTCKHLFDSNPNFIDG 343
DD N Y+ GS + +K+PLGTQ+ PARTCK L +P+F DG
Sbjct: 1593 LDDGNGENYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDG 1652
Query: 344 YYYIDPNGGKVNDAVKVLCHFQT-KETCI--DPKSSHYELKNWIDE 472
Y++DPN G D+ KV C+F TC+ D KS + +W E
Sbjct: 1653 EYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPKE 1698
Score = 32.7 bits (73), Expect = 0.67
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
G G PGP GLPG+DGP
Sbjct: 1036 GTKGDPGPAGLPGKDGP 1052
Score = 32.7 bits (73), Expect = 0.67
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 62 FPGDNGPPGPIGLPGRDGP 118
FPGD GPPG G G+DGP
Sbjct: 1343 FPGDPGPPGEPGPAGQDGP 1361
Score = 32.0 bits (71), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = +2
Query: 65 PGDNGP---PGPIGLPGRDGP 118
PGD+GP PGP+G PG GP
Sbjct: 1329 PGDDGPKGSPGPVGFPGDPGP 1349
Score = 31.6 bits (70), Expect = 1.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDG 115
PG+ GPPG GLPG DG
Sbjct: 495 PGERGPPGRPGLPGADG 511
Score = 30.8 bits (68), Expect = 2.5
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = +2
Query: 65 PGDNGPPG---PIGLPGRDGP 118
PG+ GP G PIG+PGR GP
Sbjct: 1089 PGERGPAGAAGPIGIPGRPGP 1109
Score = 30.8 bits (68), Expect = 2.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG GP GP G PG DGP
Sbjct: 1251 PGPPGPRGPSGAPGADGP 1268
Score = 30.4 bits (67), Expect = 3.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = +2
Query: 62 FPGDNGPPGPI---GLPGRDGP 118
FPGD G PGP+ GL G +GP
Sbjct: 1058 FPGDRGLPGPVGALGLKGNEGP 1079
Score = 30.0 bits (66), Expect = 4.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDG 115
PG +GPPGP+G PG G
Sbjct: 1455 PGPDGPPGPMGPPGLPG 1471
Score = 29.6 bits (65), Expect = 5.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
G GPPGP G PG DGP
Sbjct: 1318 GAAGPPGPKGPPGDDGP 1334
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
G NGP GP G PG GP
Sbjct: 949 GPNGPQGPTGFPGPKGP 965
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 62 FPGDNGPPGPIGLPGRDG 115
FPG GPPGP PG+DG
Sbjct: 959 FPGPKGPPGP---PGKDG 973
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG G PGP G PG GP
Sbjct: 1371 PGQTGSPGPTGEPGPSGP 1388
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG G PGP G PG+ GP
Sbjct: 1377 PGPTGEPGPSGPPGKRGP 1394
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDGP 118
PG GP GP G PG+ GP
Sbjct: 1419 PGKTGPIGPQGAPGKPGP 1436
Score = 28.9 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
GD+G GP GLPG+ GP
Sbjct: 664 GDDGEVGPRGLPGKPGP 680
Score = 28.9 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 68 GDNGPPGPIGLPGRDGP 118
G GPPGP G PG GP
Sbjct: 1078 GPPGPPGPAGSPGERGP 1094
Score = 28.9 bits (63), Expect = 9.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 65 PGDNGPPGPIGLPGRDG 115
PG GPPGP G GR G
Sbjct: 1389 PGKRGPPGPAGPEGRQG 1405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,278,884
Number of Sequences: 369166
Number of extensions: 1299964
Number of successful extensions: 11525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11142
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)