Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J22
(801 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine rec... 42 0.001
sp|Q623U2|PTDSR_CAEBR Protein psr-1 37 0.063
sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine rec... 37 0.082
sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR 37 0.082
sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine rec... 37 0.082
sp|Q6AYK2|PTDSR_RAT Protein PTDSR 37 0.082
sp|P87416|CYB_ELASE Cytochrome b 36 0.14
sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2 34 0.53
sp|Q9MLK4|CYB_PSEAU Cytochrome b 33 0.91
sp|Q9VD28|PTDSR_DROME Protein PSR 33 1.2
>sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine receptor 1)
Length = 400
Score = 42.4 bits (98), Expect = 0.001
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 7/178 (3%)
Frame = +2
Query: 26 PIIVKDATINWTAQNLFSFDFFQTIYTYALMSKTNKFSNISNLFSRNSLTSDEKMRILLD 205
P+I+ T NW A++ ++ + +S + + E D
Sbjct: 74 PVIITGLTDNWAAKDKWTVE------------------RLSKKYRNQNFKCGED-----D 110
Query: 206 NSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPWYVGWSNCDPLVSKILRQHYSTP 385
N N + ++++ DY +NN + S + S + +K L + YS P
Sbjct: 111 NGNSVRMKMKYYH---DYM---------LNNKDDSPLYIFDSSFAERRKTKKLSEDYSVP 158
Query: 386 YFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538
F ++ + D W MG G +HID + +W + L+G K W L PP
Sbjct: 159 KFFEDDLFHYADDKKRPPHRWFVMGPARSGTAIHIDPLGTSAWNSLLQGHKRWVLIPP 216
>sp|Q623U2|PTDSR_CAEBR Protein psr-1
Length = 397
Score = 37.0 bits (84), Expect = 0.063
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +2
Query: 290 VNNFNTSIPWYVGWSNCDPLVSKILRQHYSTPYFLPENSESHNSD--------WIFMGHP 445
+NN + S + S + +K L + Y P F E+ H +D W MG
Sbjct: 127 LNNRDDSPLYIFDSSFAERRKTKKLSEDYKVPKFF-EDDLFHYADHKKRPPHRWFVMGPA 185
Query: 446 GYGAQMHIDFVELPSWQAQLKGRKLWKLKPP 538
G +HID + +W + L G K W L PP
Sbjct: 186 RSGTAIHIDPLGTSAWNSLLLGYKRWVLIPP 216
>sp|Q6NYC1|PTDSR_HUMAN Protein PTDSR (Phosphatidylserine receptor)
sp|Q5R6G2|PTDSR_PONPY Protein PTDSR
Length = 403
Score = 36.6 bits (83), Expect = 0.082
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +2
Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
L + Y P F ++ + + W MG P G +HID + +W A ++G K
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205
Query: 521 WKLKP---PQECI 550
W L P P+E I
Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q5ZMK5|PTDSR_CHICK Protein PTDSR
Length = 414
Score = 36.6 bits (83), Expect = 0.082
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +2
Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
L + Y P F ++ + + W MG P G +HID + +W A ++G K
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205
Query: 521 WKLKP---PQECI 550
W L P P+E I
Sbjct: 206 WCLFPTSTpreLI 218
>sp|Q9ERI5|PTDSR_MOUSE Protein PTDSR (Phosphatidylserine receptor) (Apoptotic cell
clearance receptor PtdSerR)
Length = 403
Score = 36.6 bits (83), Expect = 0.082
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +2
Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
L + Y P F ++ + + W MG P G +HID + +W A ++G K
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205
Query: 521 WKLKP---PQECI 550
W L P P+E I
Sbjct: 206 WCLFPTNTpreLI 218
>sp|Q6AYK2|PTDSR_RAT Protein PTDSR
Length = 403
Score = 36.6 bits (83), Expect = 0.082
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +2
Query: 362 LRQHYSTPYFLPENSESHNSD-------WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKL 520
L + Y P F ++ + + W MG P G +HID + +W A ++G K
Sbjct: 146 LLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 205
Query: 521 WKLKP---PQECI 550
W L P P+E I
Sbjct: 206 WCLFPTNTpreLI 218
>sp|P87416|CYB_ELASE Cytochrome b
Length = 214
Score = 35.8 bits (81), Expect = 0.14
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 20/155 (12%)
Frame = +2
Query: 11 AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTY--------ALMSKTNKFSNISNLF 157
A+S I +D WT QNL + FF IY + M+K S ++ LF
Sbjct: 60 AFSSVVHITRDVPYGWTMQNLHAISASLFFICIYIHIARGLYYGLYMNKEVWLSGVTLLF 119
Query: 158 SRNSLTSDEKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW------ 319
+ + FF Y + + + A + N T+IP+
Sbjct: 120 --------------------TLMATAFFGYVLPWGQMSFWAATVITNLLTAIPYLGTMLT 159
Query: 320 ---YVGWSNCDPLVSKILRQHYSTPYFLPENSESH 415
+ G+S DP +++ H+ P+ + S +H
Sbjct: 160 TWLWGGFSXNDPTLTRFFALHFILPFIIISLSSAH 194
>sp|Q7ZX37|PTSR2_XENLA Protein PTDSR2
Length = 403
Score = 33.9 bits (76), Expect = 0.53
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKP---PQECI 550
W MG P G +HID + +W + + G K W L P P+E I
Sbjct: 174 WFVMGPPRSGTGIHIDPLGTSAWNSLVHGHKRWCLFPTNTpreLI 218
>sp|Q9MLK4|CYB_PSEAU Cytochrome b
Length = 372
Score = 33.1 bits (74), Expect = 0.91
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Frame = +2
Query: 11 AYSGKPIIVKDATINWTAQNLFSFD---FFQTIYTYALMSKTNKFSNISNLFSRNSLTSD 181
A+S IV+D W QN+ + FF IYT+ + ++ S
Sbjct: 54 AFSSVTHIVRDVPYGWIMQNMHAIGASMFFICIYTHIA-----RGLYYGLYLNKEVWLSG 108
Query: 182 EKMRILLDNSNESSLTCQFFNYQTDYTNLEDFLARNVNNFNTSIPW---------YVGWS 334
+ I+L + FF Y + + + A + N T+IP+ + G+S
Sbjct: 109 TALLIVL-------MATAFFGYVLPWGQMSFWAATVITNLLTAIPYMGPKLTTWFWGGFS 161
Query: 335 NCDPLVSKILRQHYSTPYFLPENSESH 415
DP +++ H+ P+ + S H
Sbjct: 162 INDPTLTRFFALHFILPFLIISLSSIH 188
>sp|Q9VD28|PTDSR_DROME Protein PSR
Length = 408
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 425 WIFMGHPGYGAQMHIDFVELPSWQAQLKGRKLWKLKPPQ 541
W MG G +HID + +W ++G K W L P Q
Sbjct: 179 WFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQ 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,051,819
Number of Sequences: 369166
Number of extensions: 1760684
Number of successful extensions: 4147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)