Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E17
(705 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 208 1e-53
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 207 2e-53
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 206 4e-53
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 206 4e-53
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 205 8e-53
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 205 8e-53
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 204 2e-52
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 204 2e-52
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 204 2e-52
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 202 9e-52
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 208 bits (529), Expect = 1e-53
Identities = 102/188 (54%), Positives = 135/188 (71%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT GDL V+D +L K++APA+ A+AP+ V++P Q T LGPEKTSFFQAL IPTKI
Sbjct: 88 FVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
++GTIEIINDV ++K GD V SEA LL ML I PF YGL + Q+Y++GS +SP+ LDI
Sbjct: 148 SKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIK 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
+D+ F + +AAV L++ PT+AS PH IAN K ++ ++ T+ KEA IKE
Sbjct: 208 PEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKE 267
Query: 541 YLKDPTKF 564
Y+KDP+KF
Sbjct: 268 YIKDPSKF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 207 bits (528), Expect = 2e-53
Identities = 103/188 (54%), Positives = 135/188 (71%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT GDL V+D +L K++APA+A A+AP+ V++P Q T LGPEKTSFFQAL IPTKI
Sbjct: 88 FVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
++GTIEIINDV ++K GD V SEA LL ML I PF YGL I Q+Y++GS +SP+ LDI
Sbjct: 148 SKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIK 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
+D+ F +AAVSL + PT+AS PH IAN K ++ ++ T+ K+A IKE
Sbjct: 208 PEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKE 267
Query: 541 YLKDPTKF 564
++KDP+KF
Sbjct: 268 FIKDPSKF 275
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 206 bits (525), Expect = 4e-53
Identities = 101/188 (53%), Positives = 139/188 (73%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL ++ +L + APAKA A+AP V +P Q T +GPEKTSFFQALQIPTKI
Sbjct: 88 FVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
RGTIEI+NDV LIK GD V SE+ LL ML + PF YGL ++Q+Y++G+ Y+P+ LD+T
Sbjct: 148 ARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
+++ + F+ + VA+VSLA+N PTLASV H +AN ++ ++G++ VTD + KEAE IK
Sbjct: 208 TEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKA 267
Query: 541 YLKDPTKF 564
++ DP+KF
Sbjct: 268 FIADPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 206 bits (525), Expect = 4e-53
Identities = 105/188 (55%), Positives = 136/188 (72%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LI+ GD V SEA LL ML I PF YGL IQQ+Y+NGS YSP+ LDIT
Sbjct: 148 SRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDIT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
ED + + F+E + +A+V L + PTLAS+PH I N K V+ ++V TDY+ A+ +K
Sbjct: 208 EDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKA 267
Query: 541 YLKDPTKF 564
+L DP++F
Sbjct: 268 FLADPSRF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 205 bits (522), Expect = 8e-53
Identities = 108/191 (56%), Positives = 134/191 (70%), Gaps = 3/191 (1%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK---IFPFQYGLKIQQIYENGSCYSPDAL 351
+RGTIEI++DV LIK GD V SEA LL ML I PF YGL IQQ+Y+NGS YSP+ L
Sbjct: 148 SRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVL 207
Query: 352 DITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEG 531
DITED + + F++ + +A+V L + PTLAS+PH I N K V+ ++V TDY AE
Sbjct: 208 DITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEK 267
Query: 532 IKEYLKDPTKF 564
+K YL DPT F
Sbjct: 268 VKAYLADPTAF 278
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 205 bits (522), Expect = 8e-53
Identities = 105/188 (55%), Positives = 134/188 (71%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ+Y+NGS YSP+ LDIT
Sbjct: 148 SRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDIT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
ED + F+E + +A+V L + PT+ASVPH + N K V+ L+V TDY+ A+ +K
Sbjct: 208 EDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKA 267
Query: 541 YLKDPTKF 564
+L DP+ F
Sbjct: 268 FLADPSAF 275
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 204 bits (519), Expect = 2e-52
Identities = 105/188 (55%), Positives = 133/188 (70%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDIT
Sbjct: 148 SRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDIT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
E+ + F+E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K
Sbjct: 208 EETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKA 267
Query: 541 YLKDPTKF 564
+L DP+ F
Sbjct: 268 FLADPSAF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 204 bits (518), Expect = 2e-52
Identities = 106/188 (56%), Positives = 132/188 (70%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ+++NGS YSP+ LDIT
Sbjct: 148 SRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDIT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
E + F+E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K
Sbjct: 208 EQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKA 267
Query: 541 YLKDPTKF 564
+L DP+ F
Sbjct: 268 FLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 204 bits (518), Expect = 2e-52
Identities = 103/188 (54%), Positives = 134/188 (71%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 88 FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKI 147
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDIT
Sbjct: 148 SRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDIT 207
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
E+ + + F+E + VA+V L + PT+ASVPH I N K V+ ++V TDY AE +K
Sbjct: 208 EETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKA 267
Query: 541 YLKDPTKF 564
+L DP+ F
Sbjct: 268 FLADPSAF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 202 bits (513), Expect = 9e-52
Identities = 104/188 (55%), Positives = 132/188 (70%)
Frame = +1
Query: 1 FVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKI 180
FVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI
Sbjct: 79 FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKI 138
Query: 181 TRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDIT 360
+RGTIEI++DV LIK GD SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDIT
Sbjct: 139 SRGTIEILSDVQLIKTGDKEGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDIT 198
Query: 361 EDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKE 540
E+ + F+E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K
Sbjct: 199 EETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKA 258
Query: 541 YLKDPTKF 564
+L DP+ F
Sbjct: 259 FLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,622,402
Number of Sequences: 369166
Number of extensions: 1250719
Number of successful extensions: 3320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3307
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)