Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N02
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RCF7|PDZK1_PONPY PDZ domain containing protein 1 (Na(+... 32 0.45
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 32 0.59
sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting AT... 31 1.0
sp|Q5T2W1|PDZK1_HUMAN PDZ domain containing protein 1 (CFTR... 29 2.9
sp|Q37896|LYS_BPB03 Lysozyme (Lysis protein) (Muramidase) (... 29 3.8
sp|Q7NAV0|RS4_MYCGA 30S ribosomal protein S4 29 3.8
sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu) 28 5.0
sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (P... 28 5.0
sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN 28 5.0
sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 (Phos... 28 6.5
>sp|Q5RCF7|PDZK1_PONPY PDZ domain containing protein 1 (Na(+)/H(+) exchanger regulatory
factor 3) (Sodium-hydrogen exchanger regulatory factor
3)
Length = 519
Score = 32.0 bits (71), Expect = 0.45
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 9 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 176
V I+ V+V L EP E +++ S+G V V +D +P++ S+ D
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPP 478
Query: 177 NDCYDDKETITVESKSKTSIRRKVA 251
+ D KE I VESK + + ++ A
Sbjct: 479 DTPPDSKEGIVVESKHDSHMAKERA 503
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 31.6 bits (70), Expect = 0.59
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 132 HDINLPLIISICDNENDCYDDKETITVESKSKTSIRR-----KVALLKTYKNPGEINIKM 296
H+I LP +++ C ++ CY + I + TSI + LLK Y G+IN+
Sbjct: 605 HEIFLPGVVNFCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDINLYQ 664
Query: 297 KVS 305
K S
Sbjct: 665 KYS 667
>sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting ATPase IG (ATPase class I type
11C) (ATPase IG) (ATPase IQ) (ATPase class VI type 11C)
Length = 1132
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Frame = +3
Query: 3 FMVTIDAQSVSVKASLQEPCEGEINKST-----------------SNGGYVEYSVHNTLR 131
F++T+ A + L+ + E+NKST G VE T
Sbjct: 100 FVITVTAIKQGYEDCLRHRADNEVNKSTVYIIENAKRVRKESEKIKVGDVVEVQADETFP 159
Query: 132 HDINLPLIISICDNENDCYDDKETITVESKSKT--SIRRKVAL 254
D+ +++S C + CY ++ ES KT ++R +AL
Sbjct: 160 CDL---ILLSSCTTDGTCYVTTASLDGESNCKTHYAVRDTIAL 199
>sp|Q5T2W1|PDZK1_HUMAN PDZ domain containing protein 1 (CFTR-associated protein of 70 kDa)
(Na/Pi cotransporter C-terminal-associated protein)
(NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3)
(Sodium-hydrogen exchanger regulatory factor 3)
Length = 519
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +3
Query: 9 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 176
V I+ V+V L EP E +++ S+G V V +D +P++ S+ D
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPL 478
Query: 177 NDCYDDKETITVESKSKTSIRRKVA 251
+ D KE I VES + + ++ A
Sbjct: 479 DTPPDSKEGIVVESNHDSHMAKERA 503
>sp|Q37896|LYS_BPB03 Lysozyme (Lysis protein) (Muramidase) (Endolysin) (Morphogenesis
protein 2)
Length = 263
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 210 VESKSKTSIRRKVALLKTYKNPGEINIKMKVSLGNSKATASCSFLLE 350
+ K KTS + + L T KNP +I + ++++G S ++ + ++
Sbjct: 176 IAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGGSPVKSTLKYKIK 222
>sp|Q7NAV0|RS4_MYCGA 30S ribosomal protein S4
Length = 207
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 69 EINKSTSNGGYVEYSVHNTLRHDINLPLII 158
E+NK T +G YV Y N L D+N ++
Sbjct: 170 EVNKKTLSGTYVRYPERNELPADVNETYVV 199
>sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu)
Length = 889
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +3
Query: 9 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 188
VTI+AQ +S+ A C K G + Y RHD+N I+ + + ++ +
Sbjct: 73 VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132
Query: 189 DDKETITVESKSKT----SIRRKVALLKTYKNP 275
+ V S T IR + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHALYVHSYKAP 165
>sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2)
Length = 890
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +3
Query: 9 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 188
VTI+AQ +S+ A C K G + Y RHD+N I+ + + ++ +
Sbjct: 73 VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132
Query: 189 DDKETITVESKSKT----SIRRKVALLKTYKNP 275
+ V S T IR + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHTLYVHSYKAP 165
>sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN
Length = 924
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 162 ICDNENDCYDDKETITVESKSKTSIRRKVALLKTYKNP 275
+ D+E DD+ET E + KT +RR+ K K+P
Sbjct: 855 VVDDEGTEADDEETHPPEERQKTEVRRRRPPKKPSKSP 892
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 (Phosphate metabolism protein 2)
Length = 835
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 159 SICDNENDCYDDKETITVESKSKTSIRRKVALLKTYKNPGEINIKMKVSLGNSK 320
+I +N ND Y D + +++ V LL KN G + ++ KV L N +
Sbjct: 655 NISENGNDPYSDDTDSASSFQLPPGVKKPVHLL---KNAGPVKVEAKVWLANER 705
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,739,991
Number of Sequences: 369166
Number of extensions: 599640
Number of successful extensions: 2054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)