Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M23
(813 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protei... 54 5e-07
sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protei... 54 5e-07
sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protei... 54 5e-07
sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein ... 54 5e-07
sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp) 47 8e-05
sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homol... 47 8e-05
sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component... 31 3.5
sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal 31 4.6
sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: ... 30 6.0
sp|P55308|CATA2_HORVU Catalase isozyme 2 30 6.0
>sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
TK DI P+NFQH+ H+G N F + D LK F E L+D+ K IYDF
Sbjct: 199 TKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDF 258
Query: 640 VEKHGGMSKLETEMKQKENKERRAPAIP 557
+EK GG+ ++ E++ R+AP P
Sbjct: 259 IEKTGGVEAVKNELR------RQAPPPP 280
>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
TK DI P+NFQH+ H+G N F + D LK F E L+D+ K IYDF
Sbjct: 196 TKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDF 255
Query: 640 VEKHGGMSKLETEMKQKENKERRAPAIP 557
+EK GG+ ++ E++ R+AP P
Sbjct: 256 IEKTGGVEAVKNELR------RQAPPPP 277
>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
TK DI P+NFQH+ H+G N F + D LK F E L+D+ K IYDF
Sbjct: 199 TKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDF 258
Query: 640 VEKHGGMSKLETEMKQKENKERRAPAIP 557
+EK GG+ ++ E++ R+AP P
Sbjct: 259 IEKTGGVEAVKNELR------RQAPPPP 280
>sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGL--NDHFFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
TK DI P+NFQH+ H+G N F + D LK F E L+D+ K IYDF
Sbjct: 196 TKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDF 255
Query: 640 VEKHGGMSKLETEMKQKENKERRAPAIP 557
+EK GG+ ++ E++ R+AP P
Sbjct: 256 IEKTGGVEAVKNELR------RQAPPPP 277
>sp|P42768|WASP_HUMAN Wiskott-Aldrich syndrome protein (WASp)
Length = 502
Score = 46.6 bits (109), Expect = 8e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGLNDH--FFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
+K DI P+ F+H+ H+G + F + D +L+ F E L D K IYDF
Sbjct: 234 SKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDF 293
Query: 640 VEKHGGMSKLETEMKQKE 587
+E GG+ + EM+++E
Sbjct: 294 IEDQGGLEAVRQEMRRQE 311
>sp|P70315|WASP_MOUSE Wiskott-Aldrich syndrome protein homolog (WASp)
Length = 520
Score = 46.6 bits (109), Expect = 8e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -3
Query: 811 TKNDISIPTNFQHLDHMGLNDH--FFTSENDENLKKYFKGTQF-EHLLEDKNNLKDIYDF 641
+K DI P+ F+H+ H+G + F + D +L+ F E L D K IYDF
Sbjct: 236 SKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDF 295
Query: 640 VEKHGGMSKLETEMKQKE 587
+E GG+ + EM+++E
Sbjct: 296 IEDQGGLEAVRQEMRRQE 313
>sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component N-recognin-11
(N-end-recognizing protein 11)
Length = 2052
Score = 31.2 bits (69), Expect = 3.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 691 FEHLLEDKNNLKDIYDFVEKHGGMSKLETE-MKQKENKERRA--PAIPKNT 548
F+H L+D N++ D+ DF + + L E M+ +EN+ A P + +NT
Sbjct: 435 FDHPLDDDNDVNDLLDFETEREDIDDLTDEVMETEENEAAEADYPGVNRNT 485
>sp|O14604|TYBY_HUMAN Thymosin beta-4, Y-chromosomal
Length = 44
Score = 30.8 bits (68), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 313 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 224
++EI KFD KLK + + PL SKE E
Sbjct: 7 MAEIEKFDKSKLKKTETQEKNPLSSKETIE 36
>sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 50
Score = 30.4 bits (67), Expect = 6.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 313 LSEIVKFDTKKLKNNQNNPRPPLKSKEANE 224
++EI KFD KLK + + PL SKE E
Sbjct: 13 MAEIEKFDKSKLKKTETQEKNPLPSKETIE 42
>sp|P55308|CATA2_HORVU Catalase isozyme 2
Length = 494
Score = 30.4 bits (67), Expect = 6.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 805 NDISIPTNFQHLDHMGLNDHFFTS 734
+D+ IPT+++H+D G+N + F S
Sbjct: 191 DDVGIPTDYRHMDGFGVNTYTFVS 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,079,351
Number of Sequences: 369166
Number of extensions: 1052584
Number of successful extensions: 3176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3168
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)