Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_K17
(473 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W3C2|GSCR2_DROME Hypothetical protein CG1785 35 0.088
sp|Q28820|TRDN_RABIT Triadin 34 0.15
sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 33 0.33
sp|P27951|BAG_STRAG IgA FC receptor precursor (Beta antigen... 33 0.43
sp|P59561|YAJQ_SHIFL Hypothetical UPF0234 protein yajQ 33 0.43
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 32 0.74
sp|P04146|COPIA_DROME Copia protein (Gag-int-pol protein) [... 31 1.7
sp|O60341|LSD1_HUMAN Lysine-specific histone demethylase 1 ... 31 1.7
sp|Q6ZQ88|LSD1_MOUSE Lysine-specific histone demethylase 1 ... 31 1.7
sp|Q05973|SCN1_LOLBL Sodium channel protein I, brain 30 2.2
>sp|Q9W3C2|GSCR2_DROME Hypothetical protein CG1785
Length = 478
Score = 35.0 bits (79), Expect = 0.088
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 195 KQKSAMEHKSKHAKPSEIIHPGTSWFPVKSEHNELL-EMLEKDE 323
K +++ HK+ AK E+ HPG S+ P +H L+ +++E++E
Sbjct: 195 KTHASLHHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREE 238
>sp|Q28820|TRDN_RABIT Triadin
Length = 706
Score = 34.3 bits (77), Expect = 0.15
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 DIIKSNQLREIDEASFEVTN-KLKSKELKYSTVPRIITKKIRKFVKEEVIDLWAKDSNDT 179
DII S+ E DE + +++ LK + + +KI K K E T
Sbjct: 112 DIISSDGDEEDDEGDEDTAKGEIEEPPLKRKDIHK---EKIEKQEKPE-------RKIPT 161
Query: 180 QVLSKKQKSAMEHKSKHAKPSEIIHPGTSWFPVKSEHNELLEMLEKDETKRIIEDKKFTF 359
+V+ K+++ E + KP + K+ H E LE EK ETK + +++K
Sbjct: 162 KVVHKEKEKEKEKVKEKEKPEK-----------KATHKEKLEKKEKPETKTVTKEEK-KA 209
Query: 360 KTVEEIEMK 386
+T E+IE K
Sbjct: 210 RTKEKIEEK 218
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3
protein)
Length = 758
Score = 33.1 bits (74), Expect = 0.33
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 204 SAMEHKSKHAKPSEIIHPGTSWFPVKSEHNELLEMLEKDETKRIIED-KKFTFKT 365
S +E + P E++ P + + E ELLEML + + + ++E+ K F FKT
Sbjct: 115 SGLESEFFPGFPDELLRPALACLALARERPELLEMLSRRDVEVLVENGKPFLFKT 169
>sp|P27951|BAG_STRAG IgA FC receptor precursor (Beta antigen) (B antigen)
Length = 1164
Score = 32.7 bits (73), Expect = 0.43
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Frame = +3
Query: 15 SNQLREIDEASFEVTNKLKSKELKYSTVPRIIT-----KKIRKFVKEEVIDLWAKDSNDT 179
+N L+ + + S E +K + E + + K+I+ +KE + L+ S
Sbjct: 287 ANSLQNLAQKSLEELDKATTNEQATQVKNQFLENAQKLKEIQPLIKETNVKLYKAMSESL 346
Query: 180 QVLSKKQKSAMEHKSKH--AKPSEIIHPGTSWFPVKSEHNELLEMLEK--DETKRIIEDK 347
+ + K+ K E + AK EI+ EL ++ E+ + K+++ED
Sbjct: 347 EQVEKELKHNSEANLEDLVAKSKEIVREYEGKLNQSKNLPELKQLEEEAHSKLKQVVEDF 406
Query: 348 KFTFKTVEEIEMK 386
+ FKT E++ K
Sbjct: 407 RKKFKTSEQVTPK 419
>sp|P59561|YAJQ_SHIFL Hypothetical UPF0234 protein yajQ
Length = 169
Score = 32.7 bits (73), Expect = 0.43
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Frame = +3
Query: 3 DIIKSNQLRE----IDEASFEVTNKLKSKELKYSTVPRIITKKIR-----KFVKEEVIDL 155
DI+ L+E +D AS EV ++ + ++YS +K I+ F +++D+
Sbjct: 11 DIVSEVDLQEARNAVDNASREVESRFDFRNVEYSFELNDASKTIKVLSESDFQVNQLLDI 70
Query: 156 WAKDSNDTQVLSKKQKSAMEHKSKHAKPSEIIHPGTSWFPVKSEHNELLEMLEKDETKRI 335
+ +K K +E S P I+H G +WF V+++ + +E + + ++
Sbjct: 71 ---------LRAKLLKRGIEGSSLDV-PENIVHSGKTWF-VEAKLKQGIESATQKKIVKM 119
Query: 336 IEDKK 350
I+D K
Sbjct: 120 IKDSK 124
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 32.0 bits (71), Expect = 0.74
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Frame = -1
Query: 458 IFLCADSC*FLHFNSFL-----LDIIFIRFHLDFFDCF-------KSELFIFYNSLG--F 321
+FL C F FN+ L +D+ FIRF L F +CF + L +F N L F
Sbjct: 96 LFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFLECFSLLCRCLSTFLRLFCNLLSSHF 155
Query: 320 IFL*HFQQFVMLTFHWKPRSSRVNNFGGFC-MLRFVLHSRF-LLFRQNLCVVTIFCP*IN 147
+ L F F + + +G FC + F+ F LLF L ++ +F +
Sbjct: 156 LLLMFFDFFYFIFVFF--------FYGVFCYFILFIFVFCFCLLFYVFLYLLDLFAAILQ 207
Query: 146 NFLF 135
F+F
Sbjct: 208 LFIF 211
>sp|P04146|COPIA_DROME Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;
Copia protease ]
Length = 1409
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Frame = +3
Query: 129 FVKEEVIDLWAKDSNDTQVLSKKQKSAMEH-----------KSKHAKPSEIIHPGTSWFP 275
FVK ++D K ND SKK +A+ H K++ KP +I G S +
Sbjct: 171 FVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIF-KGNSKYK 229
Query: 276 VKSEHNELLEMLEKD--ETKRIIEDK 347
VK H ++KD KRI+ +K
Sbjct: 230 VKCHHCGREGHIKKDCFHYKRILNNK 255
>sp|O60341|LSD1_HUMAN Lysine-specific histone demethylase 1 (Amine oxidase flavin
containing domain protein 2) (AOF2 protein) (BRAF35-HDAC
complex protein BHC110)
Length = 852
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Frame = +3
Query: 60 NKLKSKELKYSTVPRIITKKIRKFVKEEVIDLWAKDSNDTQVLSKKQKSAMEHKSK---- 227
N L +K + ++ + K VK+E I+ W K + L + + K K
Sbjct: 399 NVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKEL 458
Query: 228 ---HAKPSEIIHPG--TSWFPVKSEHNELL----EMLEKDETKRIIEDK 347
+ + SE+ P T+ F VKS+H +L E E ET+ +E+K
Sbjct: 459 HQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEK 507
>sp|Q6ZQ88|LSD1_MOUSE Lysine-specific histone demethylase 1 (Amine oxidase flavin
containing domain protein 2) (AOF2 protein) (BRAF35-HDAC
complex protein BHC110)
Length = 853
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Frame = +3
Query: 60 NKLKSKELKYSTVPRIITKKIRKFVKEEVIDLWAKDSNDTQVLSKKQKSAMEHKSK---- 227
N L +K + ++ + K VK+E I+ W K + L + + K K
Sbjct: 400 NVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKEL 459
Query: 228 ---HAKPSEIIHPG--TSWFPVKSEHNELL----EMLEKDETKRIIEDK 347
+ + SE+ P T+ F VKS+H +L E E ET+ +E+K
Sbjct: 460 HQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEK 508
>sp|Q05973|SCN1_LOLBL Sodium channel protein I, brain
Length = 1522
Score = 30.4 bits (67), Expect = 2.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 166 SFAHKSITSSFTNFLIFLVIILGTV 92
SFAH IT SFT I +I+L TV
Sbjct: 402 SFAHCIITDSFTEVFIIFIIVLNTV 426
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,387,202
Number of Sequences: 369166
Number of extensions: 763570
Number of successful extensions: 2794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2792
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)