Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_K12
(939 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96MU7|YT521_HUMAN Putative splicing factor YT521 206 8e-53
sp|Q9QY02|YT521_RAT Putative splicing factor YT521 (RA301-b... 202 1e-51
sp|Q9Y5A9|YTHD2_HUMAN YTH domain protein 2 (High-glucose-re... 63 1e-09
sp|Q9BYJ9|YTHD1_HUMAN YTH domain protein 1 (Dermatomyositis... 57 1e-07
sp|P59326|YTHD1_MOUSE YTH domain protein 1 (Dermatomyositis... 56 1e-07
sp|Q9NYU1|UGGG2_HUMAN UDP-glucose:glycoprotein glucosyltran... 33 1.5
sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain protein 3 (Neuron... 33 1.5
sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B... 31 4.4
sp|P47642|ATPD_MYCGE ATP synthase delta chain 31 5.8
sp|O52788|PTK_ACIJO Tyrosine-protein kinase ptk 30 7.5
>sp|Q96MU7|YT521_HUMAN Putative splicing factor YT521
Length = 727
Score = 206 bits (524), Expect = 8e-53
Identities = 120/267 (44%), Positives = 152/267 (56%), Gaps = 14/267 (5%)
Frame = +2
Query: 155 TRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKE 334
+++KY+ +AR+F+IKSNN ENVSLAK K VWST NE +LN A+ ++V+LIFSV+E
Sbjct: 346 SKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRE 405
Query: 335 SGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHLVNAW 511
SGKFQG+ARLSS S+ I+WVLP MS K L G+F+IDW+ R E+PF+K+ HL N W
Sbjct: 406 SGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPW 465
Query: 512 NEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK-----------AGPPEY 658
NEHKPVKIGRDGQEIE CG LC LF DE ++I K + G P
Sbjct: 466 NEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSR 525
Query: 659 RD--RDSNRTHPSDSRNQDNYCNKPVSYGEXXXXXXXXXXXXXXXXXXXKKEAYSDSIRS 832
R+ RD R P D ++ + Y K Y + R
Sbjct: 526 REPVRDVGRRRPEDYDIHNSRKKPRIDY----------PPEFHQRPGYLKDPRYQEVDRR 575
Query: 833 KGRNRYENNSDVFLNGNYEDYLREQTN 913
R DVFLNG+Y DY+RE N
Sbjct: 576 FSGVR----RDVFLNGSYNDYVREFHN 598
>sp|Q9QY02|YT521_RAT Putative splicing factor YT521 (RA301-binding protein)
Length = 738
Score = 202 bits (514), Expect = 1e-51
Identities = 121/271 (44%), Positives = 154/271 (56%), Gaps = 18/271 (6%)
Frame = +2
Query: 155 TRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKE 334
+++K + +AR+F+IKSNN ENVSLAK K VWST NE +LN A+ ++V+LIFSV+E
Sbjct: 349 SKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRE 408
Query: 335 SGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHLVNAW 511
SGKFQG+ARLSS S+ I+WVLP MS K L G+F+IDW+ R E+PF+K+ HL N W
Sbjct: 409 SGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPW 468
Query: 512 NEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK-----------AGPPEY 658
NEHKPVKIGRDGQEIE CG LC LF DE ++I K + G P
Sbjct: 469 NEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSR 528
Query: 659 RD--RDSNRTHPSDSRNQDNYCNKPVSYGEXXXXXXXXXXXXXXXXXXXKKEAYS--DSI 826
R+ RD R P D ++ + Y K Y DS
Sbjct: 529 REPVRDVGRRRPEDYDIHNSRKKPRIDY----------PPEFHQRPGYLKDPRYQEVDSF 578
Query: 827 RSKGRNRYEN--NSDVFLNGNYEDYLREQTN 913
+ NR + DVFLNG+Y DY+RE N
Sbjct: 579 TNLIPNRRFSGVRRDVFLNGSYNDYVREFHN 609
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2
antigen) (CLL-associated antigen KW-14)
Length = 579
Score = 63.2 bits (152), Expect = 1e-09
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Frame = +2
Query: 140 NYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---V 310
NY P + R F+IKS + +++ + N+W +T RL+ AY V
Sbjct: 397 NYN-PKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPV 455
Query: 311 LLIFSVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSK 487
L+FSV SG F G A + SA + W SQ + G F + W+ ++VP S+
Sbjct: 456 YLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQ 509
Query: 488 TNHLVNAWNEHKPVKIGRDGQEI 556
H+ NE+KPV RD QE+
Sbjct: 510 LRHIRLENNENKPVTNSRDTQEV 532
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain protein 1 (Dermatomyositis associated with cancer
putative autoantigen 1) (DACA-1)
Length = 559
Score = 56.6 bits (135), Expect = 1e-07
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Frame = +2
Query: 152 PTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---VLLIF 322
P ++ R F+IKS + +++ + ++W +T RL+ A+ + V L+F
Sbjct: 379 PKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLF 438
Query: 323 SVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHL 499
SV SG F G A + S + W SQ + G F + W+ ++VP ++ H+
Sbjct: 439 SVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNNQLRHI 492
Query: 500 VNAWNEHKPVKIGRDGQEI 556
N++KPV RD QE+
Sbjct: 493 RLENNDNKPVTNSRDTQEV 511
>sp|P59326|YTHD1_MOUSE YTH domain protein 1 (Dermatomyositis associated with cancer
putative autoantigen 1 homolog) (DACA-1 homolog)
Length = 559
Score = 56.2 bits (134), Expect = 1e-07
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Frame = +2
Query: 152 PTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---VLLIF 322
P + R F+IKS + +++ + ++W +T RL+ A+ + V L+F
Sbjct: 379 PKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLF 438
Query: 323 SVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHL 499
SV SG F G A + S + W SQ + G F + W+ ++VP ++ H+
Sbjct: 439 SVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492
Query: 500 VNAWNEHKPVKIGRDGQEI 556
N++KPV RD QE+
Sbjct: 493 RLENNDNKPVTNSRDTQEV 511
>sp|Q9NYU1|UGGG2_HUMAN UDP-glucose:glycoprotein glucosyltransferase 2 precursor (UDP-glucose
ceramide glucosyltransferase-like 1)
(UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2)
Length = 1516
Score = 32.7 bits (73), Expect = 1.5
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 233 KVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKESGKFQGYAR---LSSASNPKKHIN-W 400
K K +W + ++ + L+K + K+VL IFSV ++ + R LS N K + W
Sbjct: 1205 KTKGLWDSIKSFTVSLHKENKKEKDVLNIFSVASGHLYERFLRIMMLSVLRNTKTPVKFW 1264
Query: 401 VLPTHMS 421
+L ++S
Sbjct: 1265 LLKNYLS 1271
>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of PAS
protein 6) (MOP6)
Length = 925
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 101 QRICTQSSPNVDANYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRL 280
+R+ + SSP +DA P R+ H A IK+ E ++ ++W+ EI
Sbjct: 620 RRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNESSIWNYPPNREISR 679
Query: 281 NKAYY 295
N++ Y
Sbjct: 680 NESPY 684
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High
molecular weight salivary mucin MG1) (Sublingual gland
mucin)
Length = 5703
Score = 31.2 bits (69), Expect = 4.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 663 IATQIAPTRQTAATKTTIATNQFPMVNLAMMTIDPNITAA 782
IAT + PT TA T +T+ T P V AM T+ P TA+
Sbjct: 4795 IATVMVPTGSTATTSSTLGTAHTPKVVTAMATM-PTATAS 4833
>sp|P47642|ATPD_MYCGE ATP synthase delta chain
Length = 176
Score = 30.8 bits (68), Expect = 5.8
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Frame = +2
Query: 158 RIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKES 337
++K ++ E +F+ NF++ SL+ + N ++ T+ ++IRL ++ + +
Sbjct: 20 QVKKIYEECHFFLKLMRNFKDGSLSFLLNSYTLTKPDKIRLVDKLFKNHFCQVFVDFLKV 79
Query: 338 GKFQGYARLSSAS--------NPKKHINW---VLPTHMSQKQLSGIFQI 451
+GY L + +KHI + + +S KQL+ I I
Sbjct: 80 IILKGYFTLVEQAIKYFFDNVESQKHIQFIKIITAFELSSKQLNKIIAI 128
>sp|O52788|PTK_ACIJO Tyrosine-protein kinase ptk
Length = 733
Score = 30.4 bits (67), Expect = 7.5
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Frame = +2
Query: 128 NVDANYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKN---------VWSTTRANEIRL 280
N+ A++R +I+ F + ++ + + + + K +W+ + + +L
Sbjct: 151 NIPASFR-DKKIELRFKDGQFSLTNTQTEQVILTGKTNQSNTLRTADGLWNISIYTQDQL 209
Query: 281 NKAYYETK--------NVLLIFSVKESGKFQGYARLSSASNPKKHINWVL 406
N Y K N+L +SV E GK G L+ K HI VL
Sbjct: 210 NDVYLIQKQSLPAAVNNILTNYSVAEKGKLTGILGLNYQGTDKTHITQVL 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,544,736
Number of Sequences: 369166
Number of extensions: 1824010
Number of successful extensions: 4299
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4293
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)