Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H24
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp||Q09666_2 [Segment 2 of 2] Neuroblast differentiation-as... 36 0.11
sp||Q09666_1 [Segment 1 of 2] Neuroblast differentiation-as... 36 0.14
sp|Q06155|VAP1_STRPU Vesicle-associated protein (VAP-1) 35 0.18
sp|Q60754|MTCO_MOUSE Macrophage receptor MARCO (Macrophage ... 34 0.52
sp|P87179|YB1E_SCHPO Serine-rich protein C30B4.01c precursor 32 1.5
sp|P12108|CO9A2_CHICK Collagen alpha 2(IX) chain precursor 32 1.5
sp|P32583|SRP40_YEAST Suppressor protein SRP40 31 3.4
sp|Q05722|CA19_MOUSE Collagen alpha 1(IX) chain precursor 31 3.4
sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D (tRNA-ur... 31 3.4
sp|P20849|CO9A1_HUMAN Collagen alpha 1(IX) chain precursor 31 3.4
>sp||Q09666_2 [Segment 2 of 2] Neuroblast differentiation-associated protein
AHNAK (Desmoyokin)
Length = 1277
Score = 36.2 bits (82), Expect = 0.11
Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKL---DVDLKADDFGQX 179
++D+ P DID+ GP D I D++++GP D LKVPK+ ++++KA
Sbjct: 186 DVDVSLPKADIDVSGPKVD----VDIPDVNIEGP--DPKLKVPKVKMPEINIKAPKIS-- 237
Query: 180 XXXXXXXXXXXXXXXDLNAEGSK-KFDKDPVHHDSSPSSGNVLSDFEVGSDSKGKPLNKE 356
DL+ +G K K D D S P L EV D KG L+ E
Sbjct: 238 -----------IPDVDLDLKGPKVKGDFDV----SVPKVEGTLKGPEV--DLKGPRLDFE 280
Query: 357 ---SDLSGNFKIHTPEINLGSGLNTSSDSQGGIHIAEPK--FSGHSPSSIIPDLSA-NVN 518
+ LSG + P + + + T+ D +H+ PK FSG DL V
Sbjct: 281 GPDAKLSGP-SLKMPSLEISAPKVTAPDVD--LHLKAPKIGFSGPKLEGGEVDLKGPKVE 337
Query: 519 VPSSD 533
PS D
Sbjct: 338 APSLD 342
Score = 34.7 bits (78), Expect = 0.31
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 22/76 (28%)
Frame = +3
Query: 6 ANIDIKKPHVDID------------LKGP--------IGDNGFNSKIADIDLKGPK--GD 119
A+ID+ P VD+D LKGP I + D++LKGPK GD
Sbjct: 66 ADIDVSGPKVDVDVPDVNIEGPDAKLKGPKFKMPEMSIKAPKISMPDIDLNLKGPKVKGD 125
Query: 120 IGLKVPKLDVDLKADD 167
+ + +PK++ DLK +
Sbjct: 126 VDVTLPKVEGDLKGPE 141
Score = 34.3 bits (77), Expect = 0.40
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Frame = +3
Query: 15 DIKKPHVDI-----DLKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKVPK 140
DIK P VDI D+ GP GF + D+D+ PK DI + PK
Sbjct: 143 DIKGPKVDINTPDVDVHGPDWHLKMPKVKMPKFSMPGFKGEGPDVDVSLPKADIDVSGPK 202
Query: 141 LDVDL 155
+DVD+
Sbjct: 203 VDVDI 207
Score = 33.9 bits (76), Expect = 0.52
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Frame = +3
Query: 15 DIKKPHVDI-----DLKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKVPK 140
DIK P VDI D+ GP GF + D+D+ PK DI + PK
Sbjct: 15 DIKGPKVDINTPDVDVHGPDWHLKMPKVKMPKFSMPGFKGEGPDVDVNLPKADIDVSGPK 74
Query: 141 LDVDL 155
+DVD+
Sbjct: 75 VDVDV 79
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGPIGD---NGFNSKIADIDLKGPK---GDIGLKVPKL---DVDL 155
++D+ P DID+ GP D N + D LKGPK ++ +K PK+ D+DL
Sbjct: 58 DVDVNLPKADIDVSGPKVDVDVPDVNIEGPDAKLKGPKFKMPEMSIKAPKISMPDIDL 115
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 22/76 (28%)
Frame = +3
Query: 6 ANIDIKKPHVDID-----LKGP---------------IGDNGFNSKIADIDLKGP--KGD 119
A+ID+ P VD+D ++GP I + D+DLKGP KGD
Sbjct: 194 ADIDVSGPKVDVDIPDVNIEGPDPKLKVPKVKMPEINIKAPKISIPDVDLDLKGPKVKGD 253
Query: 120 IGLKVPKLDVDLKADD 167
+ VPK++ LK +
Sbjct: 254 FDVSVPKVEGTLKGPE 269
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKADDF 170
++D+ P V+ DLKGP + D+KGPK DI DVD+ D+
Sbjct: 125 DVDVTLPKVEGDLKGP-----------EADIKGPKVDINTP----DVDVHGPDW 163
>sp||Q09666_1 [Segment 1 of 2] Neuroblast differentiation-associated protein AHNAK
(Desmoyokin)
Length = 1683
Score = 35.8 bits (81), Expect = 0.14
Identities = 49/186 (26%), Positives = 70/186 (37%), Gaps = 12/186 (6%)
Frame = +3
Query: 18 IKKPHVDIDLKGPI--GDNGFN-------SKIADIDLKGPKGDIGLKVPKLDVDLKADDF 170
I P VD++LKGP GD + K+ D+D+KGPK DI DVD+ D+
Sbjct: 1076 ISMPDVDLNLKGPKLKGDVDVSLPEVEGEMKVPDVDIKGPKVDISAP----DVDVHGPDW 1131
Query: 171 GQXXXXXXXXXXXXXXXXDLNAEGSKKFDKDPVHHDSSPSSGNVLSDFEV-GSDSKGK-P 344
E K K V S P + D + G D+K K P
Sbjct: 1132 HLKMPKVKMPKFSMPGFKGEGPEVDVKLPKADV-DVSGPKMDAEVPDVNIEGPDAKLKGP 1190
Query: 345 LNKESDLS-GNFKIHTPEINLGSGLNTSSDSQGGIHIAEPKFSGHSPSSIIPDLSANVNV 521
K ++S KI P++ G+H+ PK G + +P + +
Sbjct: 1191 KFKMPEMSIKPQKISIPDV--------------GLHLKGPKMKGDYDVT-VPKVEGEIKA 1235
Query: 522 PSSDHK 539
P D K
Sbjct: 1236 PDVDIK 1241
Score = 34.3 bits (77), Expect = 0.40
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 18/67 (26%)
Frame = +3
Query: 9 NIDIKKPHVDI-----DLKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKV 134
++DIK P VDI ++ GP GF + ++D+ PK D+G+
Sbjct: 1237 DVDIKGPKVDINAPDVEVHGPDWHLKMPKVKMPKFSMPGFKGEGPEVDMNLPKADLGVSG 1296
Query: 135 PKLDVDL 155
PK+D+D+
Sbjct: 1297 PKVDIDV 1303
Score = 33.9 bits (76), Expect = 0.52
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 22/76 (28%)
Frame = +3
Query: 6 ANIDIKKPHVDID-----LKGPIGD-NGFNSKI--------------ADIDLKGPK--GD 119
A++D+ P VDI+ L+GP G G K+ D+ LKGPK GD
Sbjct: 906 ADVDVSGPKVDIEAPDVSLEGPEGKLKGPKFKMPEMHFKTPKISMPDVDLHLKGPKVKGD 965
Query: 120 IGLKVPKLDVDLKADD 167
+ + VPK++ ++K D
Sbjct: 966 VDVSVPKVEGEMKVPD 981
Score = 33.5 bits (75), Expect = 0.68
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 22/74 (29%)
Frame = +3
Query: 12 IDIKKPHVD-----IDLKGPIGD-NGFNSKI--------------ADIDLKGPK--GDIG 125
ID+K P +D ID++GP G G K+ D+ LKGPK GD+
Sbjct: 1366 IDVKAPKMDVNVGDIDIEGPEGKLKGPKFKMPEMHFKAPKISMPDVDLHLKGPKVKGDMD 1425
Query: 126 LKVPKLDVDLKADD 167
+ VPK++ ++K D
Sbjct: 1426 VSVPKVEGEMKVPD 1439
Score = 32.7 bits (73), Expect = 1.2
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 12 IDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPK 140
+D+K P D+D+ GP D +++ D++++GP D LK PK
Sbjct: 1155 VDVKLPKADVDVSGPKMD----AEVPDVNIEGP--DAKLKGPK 1191
Score = 32.7 bits (73), Expect = 1.2
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 15/192 (7%)
Frame = +3
Query: 18 IKKPHVDIDLKGP--IGDNGFN-------SKIADIDLKGPKGDIGLKVPKLDVDLKADDF 170
I P VD+ LKGP GD + K+ D+D+KGPK DI DV++ D+
Sbjct: 1406 ISMPDVDLHLKGPKVKGDMDVSVPKVEGEMKVPDVDIKGPKVDIDAP----DVEVHDPDW 1461
Query: 171 GQXXXXXXXXXXXXXXXXDLNAEGS------KKFDKDPVHHDSSPSSGNVLSDFEVGSDS 332
AEG +K D D S PS D ++
Sbjct: 1462 ---HLKMPKMKMPKFSMPGFKAEGPEVDVNLRKADIDV----SGPSVDTDAPDLDIE--- 1511
Query: 333 KGKPLNKESDLSGNFKIHTPEINLGSGLNTSSDSQGGIHIAEPKFSGHSPSSIIPDLSAN 512
E L G+ K P++N+ + + D +++ PK G +S +P+L +
Sbjct: 1512 -----GPEGKLKGS-KFKMPKLNIKAPKVSMPDVD--LNLKGPKLKGEIDAS-VPELEGD 1562
Query: 513 VNVPSSDHKASI 548
+ P D K +
Sbjct: 1563 LRGPQVDVKGPL 1574
Score = 30.8 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 22/73 (30%)
Frame = +3
Query: 6 ANIDIKKPHV-----DIDLKGPIGD-NGFNSKIADIDLKGPK----------------GD 119
A++DI P V D++++GP G G K+ ++++K PK G+
Sbjct: 657 ADVDISGPKVGVEVPDVNIEGPEGKLKGPKFKMPEMNIKAPKISMPDVDLHMKGPKVKGE 716
Query: 120 IGLKVPKLDVDLK 158
+ VPKL+ DLK
Sbjct: 717 YDMTVPKLEGDLK 729
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 21/60 (35%)
Frame = +3
Query: 27 PHVDIDLKGPIGDNGFN---------SKIADIDLKGPKGDI------------GLKVPKL 143
P VD+DLKGP + ++ D+D++GPK DI LK+PK+
Sbjct: 823 PDVDLDLKGPKMKGNVDISAPKIEGEMQVPDVDIRGPKVDIKAPDVEGQGLDWSLKIPKM 882
Score = 30.4 bits (67), Expect = 5.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 18 IKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVD 152
I P VD+ LKGP + + ++ + D+ +K PK+D+D
Sbjct: 948 ISMPDVDLHLKGPKVKGDVDVSVPKVEGEMKVPDVEIKGPKMDID 992
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 18/67 (26%)
Frame = +3
Query: 9 NIDIKKPHVDID-----LKGP-------------IGDNGFNSKIADIDLKGPKGDIGLKV 134
+++IK P +DID ++GP GF + ++D+ PK DI +
Sbjct: 981 DVEIKGPKMDIDAPDVEVQGPDWHLKMPKMKMPKFSMPGFKGEGREVDVNLPKADIDVSG 1040
Query: 135 PKLDVDL 155
PK+DV++
Sbjct: 1041 PKVDVEV 1047
Score = 30.4 bits (67), Expect = 5.8
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGP---IGDNGFNS-KIA----DIDLKGPK--GDIGLKVPKLDVDLK 158
++D++ P D LKGP + + F + KI+ D+ LKGPK GD + VPKL+ DL
Sbjct: 1581 DVDLECP--DAKLKGPKFKMPEMHFKAPKISMPDVDLHLKGPKVKGDADVSVPKLEGDLT 1638
Query: 159 ADDFG 173
G
Sbjct: 1639 GPSVG 1643
Score = 30.0 bits (66), Expect = 7.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +3
Query: 18 IKKPHVDIDLKGPIGDNGFNSKIADI--DLKGPKGDIG---LKVPKLDVDLKADD 167
+ P VD++LKGP ++ + ++ DL+GP+ D+ ++ DVDL+ D
Sbjct: 1534 VSMPDVDLNLKGPKLKGEIDASVPELEGDLRGPQVDVKGPLVEAEVPDVDLECPD 1588
>sp|Q06155|VAP1_STRPU Vesicle-associated protein (VAP-1)
Length = 433
Score = 35.4 bits (80), Expect = 0.18
Identities = 49/194 (25%), Positives = 68/194 (35%), Gaps = 19/194 (9%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKG----DIGLKVPKL--------DVD 152
++DIK P V D+ GP D + DID G KG GLK+PK D+D
Sbjct: 25 DVDIKGPKVGGDISGP--DLDVSGPDLDIDGGGKKGKGGFGFGLKMPKFGFGGHGKGDID 82
Query: 153 LKADDFGQXXXXXXXXXXXXXXXXDLNAEGSKKFDKDPVHHDSSPSSGNVLS---DFEV- 320
+ AD DL+ G V D G L D +
Sbjct: 83 VDAD--------------VDIERPDLDVSGDADLPSGGVGLDVGGGIGGGLGGGLDIDAN 128
Query: 321 GSDSKGKPLNKESDLSG-NFKIHTPEINLGSGLNTSSDSQGGIHIAEPK--FSGHSPSSI 491
G D K D+SG + + P++++ G + PK F GH I
Sbjct: 129 GPDVDIKGPKVGGDISGPDLDVSGPDLDIDVDGKKKGKGGFGFGMKMPKFGFGGHGKGDI 188
Query: 492 IPDLSANVNVPSSD 533
D ++ P D
Sbjct: 189 DVDADVDIERPDLD 202
Score = 33.5 bits (75), Expect = 0.68
Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Frame = +3
Query: 3 DANIDIKKPHVDI-------------DLKGPIGDN-----GFNSKIADIDLKGPKGDIGL 128
DA++DI++P +D+ D+ G IG ++ D+D+KGPK +
Sbjct: 84 DADVDIERPDLDVSGDADLPSGGVGLDVGGGIGGGLGGGLDIDANGPDVDIKGPKVGGDI 143
Query: 129 KVPKLDV---DLKADDFGQXXXXXXXXXXXXXXXXDLNAEGSKKFDKD----------PV 269
P LDV DL D G+ G D D V
Sbjct: 144 SGPDLDVSGPDLDIDVDGKKKGKGGFGFGMKMPKFGFGGHGKGDIDVDADVDIERPDLDV 203
Query: 270 HHDSSPSSGNVLSDFEVG----------SDSKGKPLNKE-----SDLSG-NFKIHTPEIN 401
D+ SG V D G D+ G ++ + D+SG + + P+++
Sbjct: 204 SGDADLPSGGVGLDVGGGIGGGLGGGLDIDANGPDVDIKGPKVGGDISGPDLDVSGPDLD 263
Query: 402 LGSGLNTSSDSQGGIHIAEPK-------FSGHSPSSIIPDLSANVNVPSSDHK 539
+ G + PK F GH I D V +P D K
Sbjct: 264 IDVDGKKKGKGGFGFGLKIPKFMDPTFGFGGHGKGDIDVDADGGVVIPEGDIK 316
Score = 32.7 bits (73), Expect = 1.2
Identities = 32/132 (24%), Positives = 53/132 (40%)
Frame = +3
Query: 9 NIDIKKPHVDIDLKGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKADDFGQXXXX 188
++D+ VD+D+ G IG G + DID KGP D+ +K P++ D+ D
Sbjct: 327 DVDLPSGGVDLDVGGGIG-GGLGGGL-DIDAKGP--DVDIKGPRVGGDISGPDL------ 376
Query: 189 XXXXXXXXXXXXDLNAEGSKKFDKDPVHHDSSPSSGNVLSDFEVGSDSKGKPLNKESDLS 368
D++ +G KK G + F G KG + D+
Sbjct: 377 -----DVSGPDLDIDGDGKKK-------GKGGFGFGLKMPKFGFGGHGKG-----DIDVD 419
Query: 369 GNFKIHTPEINL 404
+ I P++N+
Sbjct: 420 ADVDIERPDLNV 431
>sp|Q60754|MTCO_MOUSE Macrophage receptor MARCO (Macrophage receptor with collagenous
structure)
Length = 518
Score = 33.9 bits (76), Expect = 0.52
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 36 DIDLKGPIGDNGFNSKIADIDLKGPKGDIGLK 131
DI L GP G++G D+ L G KGD+G+K
Sbjct: 232 DIGLTGPKGEHGTKGDKGDLGLPGNKGDMGMK 263
>sp|P87179|YB1E_SCHPO Serine-rich protein C30B4.01c precursor
Length = 374
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +3
Query: 279 SSPSSGNVLSDFEVGSDSKGKPLNKESDLSGNFKIHTPEINLGSGLNTSSDSQGGIHIAE 458
+SPSS + S S S + S S + + + S ++SS S + I
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
Query: 459 PKFSGHSPSSIIPDLSANVNVPSS 530
S HS SS S++ + PSS
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSS 236
>sp|P12108|CO9A2_CHICK Collagen alpha 2(IX) chain precursor
Length = 677
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 48 KGPIGDNGFNSKIADIDLKGPKGDIGLKVPKLDVDLKADD 167
KGP GD G ++ ++GP+GDIG PK D+ L D
Sbjct: 268 KGPPGDPGEKGELGGRGIRGPQGDIG---PKGDMGLPGID 304
>sp|P32583|SRP40_YEAST Suppressor protein SRP40
Length = 406
Score = 31.2 bits (69), Expect = 3.4
Identities = 26/101 (25%), Positives = 42/101 (41%)
Frame = +3
Query: 276 DSSPSSGNVLSDFEVGSDSKGKPLNKESDLSGNFKIHTPEINLGSGLNTSSDSQGGIHIA 455
DS SS + SD SDS + +SD S + + + + S ++ SDS G
Sbjct: 194 DSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSG----- 248
Query: 456 EPKFSGHSPSSIIPDLSANVNVPSSDHKASIEAGVHKEKDS 578
S S SS + + SSD + ++G E ++
Sbjct: 249 ----SSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELET 285
>sp|Q05722|CA19_MOUSE Collagen alpha 1(IX) chain precursor
Length = 921
Score = 31.2 bits (69), Expect = 3.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 51 GPIGDNGFNSKIADIDL---KGPKGDIGLKVPKLDVDLKAD 164
GP G+NGF ++ L KGP G +GL+ PK D+ K +
Sbjct: 802 GPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842
>sp|P55985|TRUD_HELPY tRNA pseudouridine synthase D (tRNA-uridine isomerase D) (tRNA
pseudouridylate synthase D)
Length = 381
Score = 31.2 bits (69), Expect = 3.4
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = -2
Query: 438 LENQTKYLNQSLN*FLGYGF*NYQINQILYSKVFLS---NHYQLRNHLKHFR 292
L+NQTK+ +Q LN FL + +Y N +L ++ +S + + ++ +L+ F+
Sbjct: 184 LQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFK 235
>sp|P20849|CO9A1_HUMAN Collagen alpha 1(IX) chain precursor
Length = 921
Score = 31.2 bits (69), Expect = 3.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 51 GPIGDNGFNSKIADIDL---KGPKGDIGLKVPKLDVDLKAD 164
GP G+NGF ++ L KGP G +GL+ PK D+ K +
Sbjct: 802 GPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,010,180
Number of Sequences: 369166
Number of extensions: 1833617
Number of successful extensions: 5409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5352
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)