Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H23
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S (Phos... 77 8e-14
sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S (Phosph... 76 1e-13
sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S (Phos... 75 2e-13
sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog 42 0.002
sp|Q9JXK5|PUR4_NEIMB Phosphoribosylformylglycinamidine synt... 38 0.032
sp|Q04080|GPI17_YEAST GPI transamidase component GPI17 38 0.042
sp|Q02362|ICP4_GAHVG Trans-acting transcriptional activator... 36 0.12
sp|Q51791|PHZE_PSEFL Anthranilate synthase, phenazine speci... 35 0.21
sp|Q51519|PHZB_PSECL Anthranilate synthase, phenazine speci... 34 0.47
sp|Q9F6X6|BCHN_CHLAU Light-independent protochlorophyllide ... 33 1.0
>sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 76.6 bits (187), Expect = 8e-14
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Frame = +2
Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
+++S Y+ TFSL+ P PK D WD +++P L +L+ + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEGAVQRFVQPFLNRLSVAGNFSVDSQILYYAM 279
Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
L + P ++ + L HV+N +E+ LGS+ LHF+ Y+ + + I
Sbjct: 280 LG-VNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLHFLLYVPELAHSPLYI 338
Query: 632 QLHTEGN---TDAFAVPRWGGVAFMN------NVS-LPVNAD----DLMGVFLPQICSLM 769
Q +G T+AF PRWGG+ N N S LPV + +M VFL Q+ L
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEVDMVRVMEVFLAQLRLLF 397
Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
G+ +P + P + L G+ W++D L
Sbjct: 398 GIAQPQVPPKCL----LSGPKSEGLMTWELDRLL 427
>sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 76.3 bits (186), Expect = 1e-13
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Frame = +2
Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
+++S Y+ TFSL+ P PK D WD Y++P L +L+ + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEEGVQRYVQPFLNRLSAAGNFSVDSQILYYAM 279
Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
L + P ++ + L HV+N +E+ LGS+ L+F+ Y+ + + I
Sbjct: 280 LG-VNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338
Query: 632 QLHTEGN---TDAFAVPRWGGVAFMN------NVS-LPVNAD----DLMGVFLPQICSLM 769
Q +G T+AF PRWGG+ N N S LPV + +M VFL Q+ L
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEVDMAQVMEVFLAQLRLLF 397
Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
G+ +P + P + L G+ W++D L
Sbjct: 398 GIAQPQVPPKCL----LSGPKSEGLMTWELDRLL 427
>sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 75.5 bits (184), Expect = 2e-13
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Frame = +2
Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
+++S Y+ TFSL+ P PK D WD Y++P L L + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAM 279
Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
L + P ++ + L HV+N +E+ LGS+ L+F+ Y+ + + I
Sbjct: 280 LG-VNPRFDSASSSYYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338
Query: 632 QLHTEGN---TDAFAVPRWGGVAFMNNVSLPVNADDL-----------MGVFLPQICSLM 769
Q +G T+AF PRWGG+ N S NA L M VFL Q+ L
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLF 397
Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
G+ +P + P + L G+ W++D L
Sbjct: 398 GIAQPQLPPKCL----LSGPTSEGLMTWELDRLL 427
>sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog
Length = 554
Score = 42.4 bits (98), Expect = 0.002
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Frame = +2
Query: 242 SLTDIPKRIRSFLTRVRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAP 421
S T P R + T V+ S +Y SL+V + WD Y PL+ +LA
Sbjct: 220 SSTVEPSRAETKRT-VQFSPQYRVLLSLLVGEGNH-EPINWDIENAIQKYFNPLIEQLAS 277
Query: 422 FISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKE-DLTHVVNGIETYLG-----SNTGL 583
+ + +QI Y V ++ ++F +K DL ++VN E YL +
Sbjct: 278 LAKLNIETQIQYFVE-----DAEAYIKDDKFCTKHADLPNLVNNFEKYLSFSPHIREPTI 332
Query: 584 HFVGYIASSSEAEGGIQLHTEGN----TDAFAVPRWGGVAFMN 700
HFV Y+ S + L E + T++ +P+WG + +N
Sbjct: 333 HFVLYVPSPQIQP--LWLENEDSNIIPTNSMLLPQWGSITTIN 373
>sp|Q9JXK5|PUR4_NEIMB Phosphoribosylformylglycinamidine synthase (FGAM synthase) (FGAMS)
(Formylglycinamide ribotide amidotransferase) (FGARAT)
(Formylglycinamide ribotide synthetase)
Length = 1320
Score = 38.1 bits (87), Expect = 0.032
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 425 ISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTGLHFVGYIA 604
++ K +S +I G ++ER +P+ + RF+ E+ TH++ +ET+ F G
Sbjct: 257 VAYKDNSSVIEGAKIERFYPNAAENQGYRFH--EEDTHIIMKVETHNHPTAIAPFAG--- 311
Query: 605 SSSEAEGGIQLHTEGNTDAFAVPRWGGVAF-MNNVSLP 715
++ GG ++ EG T + P+ G F ++N+++P
Sbjct: 312 -AATGAGG-EIRDEGATGKGSRPKAGLTGFTVSNLNIP 347
>sp|Q04080|GPI17_YEAST GPI transamidase component GPI17
Length = 534
Score = 37.7 bits (86), Expect = 0.042
Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 21/256 (8%)
Frame = +2
Query: 119 VPFESLYRIEKVIYKSITGIIARNDDLNGVYRAALEVPGKESLTDIPKRIRSFLTRVRTS 298
+ + S Y ++ + + ND V + +E + T + K T +
Sbjct: 124 IGYSSAYDTKETLVYYDDAAVLSNDLPFFVAQTLVEHTFQLEWTHLNKTCEGVSTNNDVA 183
Query: 299 AKYDWTFSLIVPHPKG-GDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVRLER 475
YD L V G G+ W+ Y P + L+P ++ V S I+Y L
Sbjct: 184 ISYDPNIHLSVTLLSGDGNPVAWEIEPTLTDYFSPFRKFLSPLVNFTVDSSIVYHNDLNL 243
Query: 476 IWPSKYRDHTNRFYSKEDLTHVVNGIE----TYLGSNTGLHF-VGYIASSSEAEG----- 625
+ F DL+H ++ E Y ++ L+ + + ++SS +G
Sbjct: 244 HSLNGSCTSVTWF----DLSHTIDLSELSSMAYYPEDSALNLAIVFPSASSSPDGLAFIN 299
Query: 626 GIQLHTEGNT---DAFAVPRWGGVAFMNNVSLPVNA-------DDLMGVFLPQICSLMGL 775
G ++ E T +++ VP+W GV +N + L N+ + +M F I L+GL
Sbjct: 300 GTRISDEITTLDWNSYLVPQW-GVIIINKMPLKPNSVISEDYLEPMMYRFATDIFQLLGL 358
Query: 776 TKPIIDPLIIPFERLD 823
T+ D L+ P+ +D
Sbjct: 359 TEGSQD-LLSPYITID 373
>sp|Q02362|ICP4_GAHVG Trans-acting transcriptional activator protein ICP4
(Immediate-early protein IE175)
Length = 1415
Score = 36.2 bits (82), Expect = 0.12
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 869 TTHRSATRTLQKPSQDPIAQTG*S--GDRLSVWSAPSSCRSAAETPP*GRLHSPAGKRCS 696
TTHR+ + PS + + S L V S+PSS RS + +PP R S S
Sbjct: 146 TTHRNVGHVSRSPSSSSSSSSSSSPSSSSLIVLSSPSSSRSPSPSPPRPRADS------S 199
Query: 695 *RPRRPSGAQRMRQCCPQ 642
RPRR G+ R + PQ
Sbjct: 200 SRPRRGRGSNRGGRSGPQ 217
>sp|Q51791|PHZE_PSEFL Anthranilate synthase, phenazine specific [Includes: Glutamine
amidotransferase]
Length = 637
Score = 35.4 bits (80), Expect = 0.21
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
Frame = +2
Query: 212 RAALEVPGKESLTD-IPKRIRSF--LTRVRT-SAKYDWT-FSLIVPHPKGGDSTEWDFPR 376
R L V +++ T I K++R+ + VR+ S +Y + + L++ P G+ ++ P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVRSFSDEYSFDGYDLVIMGPGPGNPSDVQLPK 495
Query: 377 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 475
I+HL+ + LL + PF++V +S Q++ G+ L+R
Sbjct: 496 IDHLHVAIRSLLNQQRPFLAVCLSHQVLSLCLGLELQR 533
>sp|Q51519|PHZB_PSECL Anthranilate synthase, phenazine specific [Includes: Glutamine
amidotransferase]
Length = 637
Score = 34.3 bits (77), Expect = 0.47
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Frame = +2
Query: 212 RAALEVPGKESLTD-IPKRIRSF---LTRVRTSAKYDWT-FSLIVPHPKGGDSTEWDFPR 376
R L V +++ T I K++R+ +T S +Y + + L++ P G+ +E P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVCSFSDEYSFEGYDLVIMGPGPGNPSEVQQPK 495
Query: 377 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 475
I HL+ + LL + PF++V +S Q++ G+ L+R
Sbjct: 496 INHLHVAIRSLLSQQRPFLAVCLSHQVLSLCLGLELQR 533
>sp|Q9F6X6|BCHN_CHLAU Light-independent protochlorophyllide reductase subunit N (LI-POR
subunit N) (DPOR subunit N)
Length = 444
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 375 LGKSHSVESPPFG*GTIRENVQSYFADVRTRVRNER 268
L SH E PP G GT+ +Q Y T++RNER
Sbjct: 207 LPASHFTELPPIGPGTVIAPLQPYLHKTATQLRNER 242
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,152,152
Number of Sequences: 369166
Number of extensions: 2750174
Number of successful extensions: 8045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8032
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)