Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H12
(747 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 322 7e-88
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 321 1e-87
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 320 3e-87
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 319 6e-87
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 318 7e-87
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 318 1e-86
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 317 2e-86
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 317 3e-86
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 316 5e-86
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 315 8e-86
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 322 bits (825), Expect = 7e-88
Identities = 157/212 (74%), Positives = 179/212 (84%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFV+GVNHEKY+ SL +VSNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA+TA
Sbjct: 122 PSADAPMFVVGVNHEKYENSLKVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHAFTA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGA QNIIP IPELNGKITGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIFDA AGI L
Sbjct: 242 DLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
+ FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 302 NENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 321 bits (823), Expect = 1e-87
Identities = 156/212 (73%), Positives = 177/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L
Sbjct: 242 DLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 302 NDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 320 bits (819), Expect = 3e-87
Identities = 156/212 (73%), Positives = 178/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +SS FDA AGI L
Sbjct: 242 DLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 302 NDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 319 bits (817), Expect = 6e-87
Identities = 155/212 (73%), Positives = 176/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L
Sbjct: 242 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 302 NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 318 bits (816), Expect = 7e-87
Identities = 155/212 (73%), Positives = 177/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +SS FDA AGI L
Sbjct: 242 DLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 302 NDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 318 bits (814), Expect = 1e-86
Identities = 154/212 (72%), Positives = 177/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS K+WRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L
Sbjct: 242 DLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNE+GYS RV+DL+ +M++K+
Sbjct: 302 NDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 317 bits (812), Expect = 2e-86
Identities = 154/212 (72%), Positives = 176/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKY+ +L IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TA
Sbjct: 111 PSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 170
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 171 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 230
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L
Sbjct: 231 DLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 290
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 291 NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 317 bits (811), Expect = 3e-86
Identities = 154/212 (72%), Positives = 177/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +SS FDA AGI L
Sbjct: 242 DLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 302 NDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 316 bits (809), Expect = 5e-86
Identities = 154/212 (72%), Positives = 175/212 (82%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PS DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TA
Sbjct: 122 PSXDAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +SS FDA AGI L
Sbjct: 242 DLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 302 NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 315 bits (807), Expect = 8e-86
Identities = 153/212 (72%), Positives = 176/212 (83%)
Frame = +3
Query: 3 PSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTA 182
PSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TA
Sbjct: 122 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 181
Query: 183 TQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVV 362
TQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVV
Sbjct: 182 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 241
Query: 363 DLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQL 542
DLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +SS FDA AGI L
Sbjct: 242 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIAL 301
Query: 543 TDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 638
D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 302 NDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,511,165
Number of Sequences: 369166
Number of extensions: 1567773
Number of successful extensions: 4213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)