Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H11
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 172 2e-43
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 170 8e-43
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 169 1e-42
sp|P50256|EF1C_PORPU Elongation factor 1-alpha C (EF-1-alpha) 169 1e-42
sp|P51554|EF1A_HYDAT Elongation factor 1-alpha (EF-1-alpha) 169 2e-42
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 169 2e-42
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 169 2e-42
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 169 2e-42
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 168 3e-42
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 168 4e-42
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 172 bits (436), Expect = 2e-43
Identities = 79/99 (79%), Positives = 91/99 (91%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVIIMNHPG+I +GY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDA
Sbjct: 340 FTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
G++ LIP+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 GIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 170 bits (431), Expect = 8e-43
Identities = 80/99 (80%), Positives = 90/99 (90%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA
Sbjct: 340 FTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V++IP KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 AIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 169 bits (429), Expect = 1e-42
Identities = 78/99 (78%), Positives = 91/99 (91%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVI++NHPG+I +GY+PVLDCHTAHIACKFAELL+KIDRRSGK LED PK KSGD+
Sbjct: 338 FTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDS 397
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+VK+IPSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 398 AIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P50256|EF1C_PORPU Elongation factor 1-alpha C (EF-1-alpha)
Length = 449
Score = 169 bits (429), Expect = 1e-42
Identities = 78/99 (78%), Positives = 89/99 (89%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII+NHPGEIH+GY+PVLDCHTAHIACKF+EL+ K+DRRSGK LED PK KSGDA
Sbjct: 332 FNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDA 391
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+VK++ SKPMCVE F+ YPPLGRFAVRDM+QTVAVGVI
Sbjct: 392 AMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVI 430
>sp|P51554|EF1A_HYDAT Elongation factor 1-alpha (EF-1-alpha)
Length = 468
Score = 169 bits (428), Expect = 2e-42
Identities = 80/99 (80%), Positives = 89/99 (89%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII+NHPGEIH+GY PVLDCHTAHIACKFAELL+KIDRRSGK +E PK KSGDA
Sbjct: 342 FKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDA 401
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
++ LIPSK MCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 AIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVI 440
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 169 bits (427), Expect = 2e-42
Identities = 77/99 (77%), Positives = 90/99 (90%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F +QVII+NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA
Sbjct: 340 FTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V+++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 AIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 169 bits (427), Expect = 2e-42
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA
Sbjct: 340 FTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V++IP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 AIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 169 bits (427), Expect = 2e-42
Identities = 77/99 (77%), Positives = 90/99 (90%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F +QVII+NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA
Sbjct: 340 FTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V+++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 AIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 168 bits (426), Expect = 3e-42
Identities = 78/99 (78%), Positives = 90/99 (90%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII NHPG+I +GYSPVLDCHTAHIAC+F EL++KIDRRSGK +ED PK K+GDA
Sbjct: 338 FTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDA 397
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V++IPSKPMCVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 398 AIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 168 bits (425), Expect = 4e-42
Identities = 79/99 (79%), Positives = 89/99 (89%)
Frame = +1
Query: 4 FIAQVIIMNHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDA 183
F AQVII+NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA
Sbjct: 340 FTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDA 399
Query: 184 GLVKLIPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 300
+V +IP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 400 AIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,957,650
Number of Sequences: 369166
Number of extensions: 818192
Number of successful extensions: 2838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2828
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)