Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O20
(575 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase 31 1.9
sp|Q02722|Q300_MOUSE Protein Q300 30 5.7
sp|P57368|Y281_BUCAI Hypothetical transport protein BU281 29 7.4
>sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase
Length = 303
Score = 31.2 bits (69), Expect = 1.9
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 343 LYFICIDICLMYLLMIDFRSVLRISNGKAACIFFI 447
L+ ICI + L++L ++ R ++++ +G +CI+ I
Sbjct: 200 LWNICIFLILIFLFRLNIRGLMKLPSGALSCIYLI 234
>sp|Q02722|Q300_MOUSE Protein Q300
Length = 77
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 414 FQWKGSMYFFY-CAFVHGFCVSVVYICCTRTCSCVS 518
F W+G FY C V CV V CT TC C S
Sbjct: 16 FWWEGETNLFYVCVCV---CVCVCVCVCTLTCMCKS 48
>sp|P57368|Y281_BUCAI Hypothetical transport protein BU281
Length = 307
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 411 YFQWKGSMYFFYCAFVHGFCVSVVYICCTRTCSCVS 518
+FQWKG + + F H F +Y C + C VS
Sbjct: 147 FFQWKGILALLFALFSHAF----IYSECQKKCLNVS 178
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,381,903
Number of Sequences: 369166
Number of extensions: 879856
Number of successful extensions: 2729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)