Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O16
(524 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49448|DHE4_HUMAN Glutamate dehydrogenase 2, mitochondri... 283 1e-76
sp|Q64HZ8|DHE4_PANTR Glutamate dehydrogenase 2, mitochondri... 283 1e-76
sp|Q64I01|DHE4_GORGO Glutamate dehydrogenase 2, mitochondri... 283 1e-76
sp|Q64HZ9|DHE4_HYLLA Glutamate dehydrogenase 2, mitochondri... 281 5e-76
sp|Q64I00|DHE4_PONPY Glutamate dehydrogenase 2, mitochondri... 281 5e-76
sp|P00366|DHE3_BOVIN Glutamate dehydrogenase 1, mitochondri... 281 5e-76
sp|P26443|DHE3_MOUSE Glutamate dehydrogenase 1, mitochondri... 281 7e-76
sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondri... 281 7e-76
sp|P10860|DHE3_RAT Glutamate dehydrogenase 1, mitochondrial... 279 3e-75
sp|P82264|DHE3_CHAAC GLutamate dehydrogenase (GDH) 278 7e-75
>sp|P49448|DHE4_HUMAN Glutamate dehydrogenase 2, mitochondrial precursor (GDH)
Length = 558
Score = 283 bits (725), Expect = 1e-76
Identities = 136/174 (78%), Positives = 155/174 (89%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPGVDVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF+DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHR 322
>sp|Q64HZ8|DHE4_PANTR Glutamate dehydrogenase 2, mitochondrial precursor (GDH)
Length = 558
Score = 283 bits (725), Expect = 1e-76
Identities = 136/174 (78%), Positives = 155/174 (89%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPGVDVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF+DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHR 322
>sp|Q64I01|DHE4_GORGO Glutamate dehydrogenase 2, mitochondrial precursor (GDH)
Length = 558
Score = 283 bits (725), Expect = 1e-76
Identities = 136/174 (78%), Positives = 155/174 (89%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPGVDVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF+DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHR 322
>sp|Q64HZ9|DHE4_HYLLA Glutamate dehydrogenase 2, mitochondrial precursor (GDH)
Length = 555
Score = 281 bits (720), Expect = 5e-76
Identities = 135/174 (77%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 146 GIRYSADVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTME 205
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 206 LAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 265
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF DKTF++QGFGNVGLHSMRYL R
Sbjct: 266 ISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHR 319
>sp|Q64I00|DHE4_PONPY Glutamate dehydrogenase 2, mitochondrial precursor (GDH)
Length = 558
Score = 281 bits (720), Expect = 5e-76
Identities = 134/174 (77%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + +G+TPGF DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSNVGMTPGFGDKTFVVQGFGNVGLHSMRYLHR 322
>sp|P00366|DHE3_BOVIN Glutamate dehydrogenase 1, mitochondrial precursor (GDH)
Length = 558
Score = 281 bits (720), Expect = 5e-76
Identities = 136/174 (78%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPGVDVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHR 322
>sp|P26443|DHE3_MOUSE Glutamate dehydrogenase 1, mitochondrial precursor (GDH)
Length = 558
Score = 281 bits (719), Expect = 7e-76
Identities = 135/174 (77%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHR 322
>sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondrial precursor (GDH)
Length = 558
Score = 281 bits (719), Expect = 7e-76
Identities = 135/174 (77%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPGF DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHR 322
>sp|P10860|DHE3_RAT Glutamate dehydrogenase 1, mitochondrial precursor (GDH)
(Memory-related protein 2) (MRG-2)
Length = 558
Score = 279 bits (713), Expect = 3e-75
Identities = 134/174 (77%), Positives = 153/174 (87%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYS DVS DEVKALA+LMTYKCAVVDVPFGGAKAG++I+P+ YT ELE+ITRRFT+E
Sbjct: 149 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 208
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A T G D++A ACVTGKPISQGGIHGR
Sbjct: 209 LAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 268
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENFI+ + LG+TPG DKTF++QGFGNVGLHSMRYL R
Sbjct: 269 ISATGRGVFHGIENFINEASYMSILGMTPGLGDKTFVVQGFGNVGLHSMRYLHR 322
>sp|P82264|DHE3_CHAAC GLutamate dehydrogenase (GDH)
Length = 504
Score = 278 bits (710), Expect = 7e-75
Identities = 132/174 (75%), Positives = 154/174 (88%)
Frame = +3
Query: 3 GIRYSMDVSKDEVKALAALMTYKCAVVDVPFGGAKAGLRIDPRLYTVGELERITRRFTVE 182
GIRYSMDVS DEVKALA+LMTYKCAVVDVPFGGAKAG+RI+ + Y+ ELE+ITRRFT+E
Sbjct: 95 GIRYSMDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVRINTKNYSDNELEKITRRFTIE 154
Query: 183 LAKKNFIGPGVDVPAPDMGTGEREMAWIANTFAHTRGDNDLHASACVTGKPISQGGIHGR 362
LAKK FIGPG+DVPAPDM TGEREM+WIA+T+A+T D++A ACVTGKPISQGGIHGR
Sbjct: 155 LAKKGFIGPGIDVPAPDMSTGEREMSWIADTYANTIAHTDINAHACVTGKPISQGGIHGR 214
Query: 363 ISATGRGVYHGIENFIHNPDMVDKLGITPGFKDKTFIIQGFGNVGLHSMRYLVR 524
ISATGRGV+HGIENF++ + +G+TPG +DKTF+IQGFGNVGLHSMRYL R
Sbjct: 215 ISATGRGVFHGIENFMNEASYMSMVGLTPGVQDKTFVIQGFGNVGLHSMRYLHR 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,427,532
Number of Sequences: 369166
Number of extensions: 1384057
Number of successful extensions: 4081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3931
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)