Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_L16
(577 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 97 2e-20
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 94 2e-19
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 89 1e-17
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 88 1e-17
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 88 2e-17
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 88 2e-17
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 87 4e-17
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 86 7e-17
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 86 9e-17
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 86 9e-17
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 97.4 bits (241), Expect = 2e-20
Identities = 45/95 (47%), Positives = 63/95 (66%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNC+VFDHA P P K+ + + + S+++GPTCDG D + ++ LP+
Sbjct: 319 VYGSFNCLVFDHAHPKPI-------LHKKPSPDQPLYTSSLWGPTCDGLDQIAERVQLPE 371
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
+ VG+W+++ NMGAYTIAASS FNG + VHY M
Sbjct: 372 LHVGDWLLFENMGAYTIAASSNFNGFQQSPVHYAM 406
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 94.4 bits (233), Expect = 2e-19
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI+FDHA P +FD + E F+STI+GPTCD D + ++ +PK
Sbjct: 322 VYGSFNCILFDHAHPIGSPLFDTD--------RNEKFMSTIWGPTCDSLDLVEDKKLMPK 373
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFMYQD 296
M+VG W+ +P+MGAYT+AA++ FNG Y M ++
Sbjct: 374 MNVGEWLYYPDMGAYTLAAATTFNGFSKPVPMYVMSEE 411
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 88.6 bits (218), Expect = 1e-17
Identities = 41/95 (43%), Positives = 62/95 (65%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI+FDHA P K+ + + + S+I+GPTCDG D ++++ LP+
Sbjct: 323 VYGSFNCILFDHAHVKPV-------LTKKPKPDEKFYSSSIWGPTCDGLDRIVERFELPE 375
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
+ VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 376 LQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVM 410
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 322 VYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPE 374
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 375 MHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 87.8 bits (216), Expect = 2e-17
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 322 VYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE 374
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 375 MHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 87.8 bits (216), Expect = 2e-17
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 316 VYGSFNCILYDHAHVKPL-------LPKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE 368
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 369 MHVGDWMLFENMGAYTVAAASTFNGFQRPSIYYVM 403
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 86.7 bits (213), Expect = 4e-17
Identities = 40/95 (42%), Positives = 59/95 (62%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA P K + + +I+GPTCDG D ++++ +P+
Sbjct: 312 VYGSFNCILYDHAHVKPV-------LQKRPKPDDGCYSCSIWGPTCDGLDRIVERCNMPE 364
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
+ VG+WI++ NMGAYT+AA+S FNG +HY M
Sbjct: 365 LQVGDWILFENMGAYTVAAASTFNGFQRPTIHYVM 399
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 85.9 bits (211), Expect = 7e-17
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 322 VYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCSLPE 374
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 375 MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 85.5 bits (210), Expect = 9e-17
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 322 VYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE 374
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 375 MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 85.5 bits (210), Expect = 9e-17
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +3
Query: 3 VYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPK 182
VY SFNCI++DHA K + + + S+I+GPTCDG D ++++ LP+
Sbjct: 322 VYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE 374
Query: 183 MDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 287
M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 375 MHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,025,351
Number of Sequences: 369166
Number of extensions: 1401940
Number of successful extensions: 2610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2583
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)