Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C16-1
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (gro... 30 2.9
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 30 2.9
sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein al... 30 2.9
sp|O90729|VL2_HPV67 Minor capsid protein L2 30 4.9
sp|Q9Y113|NELFB_DROME Negative elongation factor B homolog 30 4.9
sp|P98095|FBLN2_HUMAN Fibulin-2 precursor 29 6.4
sp|Q04704|V6B_CVCAE Protein 6B 29 8.3
>sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (groES protein)
Length = 94
Score = 30.4 bits (67), Expect = 2.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 419 RVMHEGPRLVGSIMEGDKCAYCGYKG--VAYSHYEYQVFVESEI 294
RV+ G R+ + EGD+ + Y G V Y EY + ES+I
Sbjct: 46 RVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDI 89
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 30.4 bits (67), Expect = 2.9
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -2
Query: 437 GRCYIVRVMHEGPRLVGSIMEGDKCAYCGYKGVAYSHYEYQVFVESEIQNSTKLVWK-WT 261
G+ Y+ MHEG +++ D ++ + VAY+ + +V ++ N KL+ + WT
Sbjct: 160 GKGYVPADMHEGLSEEIGLIKLD-ASFSPVRKVAYTVEQARV---GQMTNYDKLILEVWT 215
Query: 260 DGKTLPENAI 231
DG PE+AI
Sbjct: 216 DGSVSPEDAI 225
>sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha chain (Nitrogenase
component I) (Dinitrogenase)
Length = 534
Score = 30.4 bits (67), Expect = 2.9
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = -2
Query: 398 RLVGSIMEGDKCAYCGYKGVAYSHYEYQVFVESEIQNSTKLVWKWTDGKTLPENAIMGGH 219
R V I+ CAY G KGV + V + + W K+ PEN G
Sbjct: 42 RTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFYTWGGRRFKSKPENGT--GL 99
Query: 218 DGDQMLFIGRACVDNQILVGSYNKTKGTLYVPYK 117
+ ++ +F ++ I+ G NK K ++ Y+
Sbjct: 100 NFNEYVF-STDMQESDIVFGGVNKLKDAIHEAYE 132
>sp|O90729|VL2_HPV67 Minor capsid protein L2
Length = 465
Score = 29.6 bits (65), Expect = 4.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 370 SPSIIDPTSRGPSCITRTI*HLPPAYTAPHGIFPFS 477
+P+II+ +S G S + HL P +T P + PFS
Sbjct: 138 TPAIINVSSIGESSVQSVTTHLNPTFTEPSVLRPFS 173
>sp|Q9Y113|NELFB_DROME Negative elongation factor B homolog
Length = 594
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 478 MRMEIFHVVQYMQVEDAI*FELCMKVRDLLDQLWKETNVHIADTKELLILIMNIK 314
+R E+ + ++V++ I + C K LD +E NV I ++EL + NIK
Sbjct: 245 LRAELLMALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKRSRELQGFLDNIK 299
>sp|P98095|FBLN2_HUMAN Fibulin-2 precursor
Length = 1184
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 470 GNIPCGAVYAGGR--CYIVRVMHEGPRLVGSIMEGDKCAYCGYKGVAYSHYEY 318
G+ C GG+ C + P + +++ D C CG G ++ +EY
Sbjct: 94 GSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCVHAGHEY 146
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 28.9 bits (63), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 380 MEGDKCAYCGYKGVAYSHYEYQVFVES 300
+EG C++ GYK AY+H +Y + S
Sbjct: 70 IEGFPCSWPGYKAYAYNHIDYHFDLSS 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,951,373
Number of Sequences: 369166
Number of extensions: 1441065
Number of successful extensions: 3859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3857
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)