Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E01
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71LE2|H33_PIG Histone H3.3 >gi|55977063|sp|P84244|H33_M... 264 2e-70
sp|Q10453|H33_CAEEL Histone H3.3 263 4e-70
sp|Q8WSF1|H33_TRIPS Histone H3.3 263 4e-70
sp|P02299|H3_DROME Histone H3 >gi|55977060|sp|P84229|H31_CH... 259 8e-69
sp|P69079|H3_STRDR Histone H3, embryonic >gi|59799549|sp|P6... 257 2e-68
sp|P68433|H31_MOUSE Histone H3.1 >gi|55977056|sp|P68432|H31... 257 3e-68
sp|P84227|H32_BOVIN Histone H3.2 >gi|55977048|sp|P84232|H3_... 257 3e-68
sp|P22843|H3_ACRFO Histone H3 256 5e-68
sp|Q71T45|H3_EUPES Histone H3 >gi|73919912|sp|Q6LCK1|H3_BRA... 256 5e-68
sp|P68428|H3_WHEAT Histone H3 >gi|55977041|sp|P68427|H3_PEA... 256 5e-68
>sp|Q71LE2|H33_PIG Histone H3.3
sp|P84244|H33_MOUSE Histone H3.3
sp|P84250|H33_DROHY Histone H3.3 (H3.A/B)
sp|P84248|H33_SPISO Histone H3.3
sp|P84245|H33_RAT Histone H3.3
sp|P84246|H33_RABIT Histone H3.3
sp|P84243|H33_HUMAN Histone H3.3
sp|P84249|H33_DROME Histone H3.3 (H3.A/B) (H3.3Q)
sp|P84247|H33_CHICK Histone H3.3 (H3.3A/B) (Histone H3 class II)
Length = 136
Score = 264 bits (675), Expect = 2e-70
Identities = 135/136 (99%), Positives = 136/136 (100%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|Q10453|H33_CAEEL Histone H3.3
Length = 136
Score = 263 bits (672), Expect = 4e-70
Identities = 134/136 (98%), Positives = 136/136 (100%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|Q8WSF1|H33_TRIPS Histone H3.3
Length = 136
Score = 263 bits (672), Expect = 4e-70
Identities = 134/136 (98%), Positives = 136/136 (100%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQSAA+GALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|P02299|H3_DROME Histone H3
sp|P84229|H31_CHICK Histone H3 (Histone H3 class I)
sp|P84239|H3_URECA Histone H3
sp|P84237|H3_TIGCA Histone H3
sp|P84235|H3_PLADU Histone H3
sp|P84234|H3_ONCMY Histone H3
sp|P84236|H3_DROHY Histone H3
sp|P84238|H3_CHITH Histone H3 (H3)
sp|P84230|H3_CAIMO Histone H3
sp|P84233|H31_XENLA Histone H3.1
sp|P84228|H32_MOUSE Histone H3.2
Length = 136
Score = 259 bits (661), Expect = 8e-69
Identities = 133/136 (97%), Positives = 135/136 (99%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|P69079|H3_STRDR Histone H3, embryonic
sp|P69078|H3_SOLST Histone H3, embryonic
sp|P69077|H3_PYCHE Histone H3, embryonic
sp|P69076|H3_PSAMI Histone H3, embryonic
sp|P69075|H3_PISOC Histone H3, embryonic
sp|P69074|H3_PISBR Histone H3, embryonic
sp|P69073|H3_PARLI Histone H3, embryonic
sp|P69072|H3_LYTPI Histone H3, embryonic
sp|P69071|H3_DERIM Histone H3, embryonic
Length = 136
Score = 257 bits (657), Expect = 2e-68
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKT+LRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|P68433|H31_MOUSE Histone H3.1
sp|P68432|H31_BOVIN Histone H3.1
sp|P68431|H31_HUMAN Histone H3.1 (H3/a) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j)
(H3/k) (H3/l)
Length = 136
Score = 257 bits (656), Expect = 3e-68
Identities = 132/136 (97%), Positives = 134/136 (98%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|P84227|H32_BOVIN Histone H3.2
sp|P84232|H3_PORAF Histone H3
sp|P84231|H3_ICTBU Histone H3
Length = 135
Score = 257 bits (656), Expect = 3e-68
Identities = 132/135 (97%), Positives = 134/135 (99%)
Frame = +2
Query: 308 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 487
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 488 LIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 667
LIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 120
Query: 668 PKDIQLARRIRGERA 712
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>sp|P22843|H3_ACRFO Histone H3
Length = 136
Score = 256 bits (654), Expect = 5e-68
Identities = 132/136 (97%), Positives = 134/136 (98%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAA KSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|Q71T45|H3_EUPES Histone H3
sp|Q6LCK1|H3_BRANA Histone H3
sp|Q6LBE3|H3_ASPOF Histone H3
sp|Q53X03|H32_MAIZE Histone H3 type 2
sp|P69248|H3_PETCR Histone H3
sp|P59226|H3_ARATH Histone H3
sp|P69247|H31_ORYSA Histone H3
sp|P69246|H31_MAIZE Histone H3 type 1
Length = 136
Score = 256 bits (654), Expect = 5e-68
Identities = 130/136 (95%), Positives = 135/136 (99%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>sp|P68428|H3_WHEAT Histone H3
sp|P68427|H3_PEA Histone H3
sp|P68430|H3_ONOVI Histone H3
sp|P68429|H31_MEDSA Histone H3.1 (Major histone H3)
Length = 136
Score = 256 bits (654), Expect = 5e-68
Identities = 130/136 (95%), Positives = 135/136 (99%)
Frame = +2
Query: 305 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 484
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 485 LLIRKLPFQRLVREIAQDFKTDLRFQSAAVGALQEASEAYLVGLFEDTNLCAIHAKRVTI 664
LLIRKLPFQRLVREIAQDFKTDLRFQS+AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 665 MPKDIQLARRIRGERA 712
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,000,885
Number of Sequences: 369166
Number of extensions: 1395587
Number of successful extensions: 4936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4897
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)