Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K16
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 297 3e-80
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 297 3e-80
sp|P02554|TBB_PIG Tubulin beta chain 297 3e-80
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 297 3e-80
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 297 3e-80
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 296 6e-80
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 296 6e-80
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 296 6e-80
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 295 8e-80
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 295 1e-79
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 297 bits (760), Expect = 3e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 297 bits (760), Expect = 3e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 297 bits (760), Expect = 3e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 297 bits (760), Expect = 3e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 297 bits (760), Expect = 3e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 126 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 185
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 186 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 245
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 246 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 275
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 296 bits (757), Expect = 6e-80
Identities = 142/150 (94%), Positives = 148/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKM+VTFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 296 bits (757), Expect = 6e-80
Identities = 142/150 (94%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 296 bits (757), Expect = 6e-80
Identities = 142/150 (94%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 295 bits (756), Expect = 8e-80
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 295 bits (755), Expect = 1e-79
Identities = 141/150 (94%), Positives = 147/150 (98%)
Frame = -3
Query: 750 FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 571
+RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+QNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 340
Query: 570 FVEWIPNNAKTAVCDIPPTGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 391
FVEWIPNN KTAVCDIPP GLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400
Query: 390 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 301
EGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,952,412
Number of Sequences: 369166
Number of extensions: 1409016
Number of successful extensions: 3617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3486
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)