Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G09
(698 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic (F... 140 2e-33
sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic (F... 140 3e-33
sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic (F... 140 3e-33
sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic ... 140 4e-33
sp|Q58034|FUMB_METJA Putative fumarate hydratase beta subun... 59 2e-08
sp|Q04718|FUMA_BACST Fumarate hydratase class I, aerobic (F... 56 8e-08
sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase beta subunit... 43 0.001
sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase beta subunit... 43 0.001
sp|Q00273|VP2_EHDV1 Outer capsid protein VP2 32 1.2
>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic (Fumarase)
Length = 580
Score = 140 bits (354), Expect = 2e-33
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +2
Query: 2 SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ IK++E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKRLECVEYPELGMEAIWKI 516
Query: 182 EVENFPAFIVVDDKGNDFFQEWQ 250
EVE+FPAFI+VDDKGNDFFQ+ Q
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQ 539
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic (Fumarase)
sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic (Fumarase)
Length = 548
Score = 140 bits (353), Expect = 3e-33
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +2
Query: 2 SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ IK +E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKI 516
Query: 182 EVENFPAFIVVDDKGNDFFQEWQV 253
EVE+FPAFI+VDDKGNDFFQ+ Q+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQL 540
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic (Fumarase)
Length = 548
Score = 140 bits (353), Expect = 3e-33
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +2
Query: 2 SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ IK +E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKI 516
Query: 182 EVENFPAFIVVDDKGNDFFQEWQV 253
EVE+FPAFI+VDDKGNDFFQ+ Q+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQL 540
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic (Fumarase)
Length = 548
Score = 140 bits (352), Expect = 4e-33
Identities = 65/81 (80%), Positives = 75/81 (92%)
Frame = +2
Query: 2 SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
S+IMLAKGNRS+QVT+ACHK+GGFYLGSIGGPAAVLAQ IK +E V Y ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKI 516
Query: 182 EVENFPAFIVVDDKGNDFFQE 244
EVE+FPAFI+VDDKGNDFFQ+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQ 537
>sp|Q58034|FUMB_METJA Putative fumarate hydratase beta subunit (Fumarase)
Length = 195
Score = 58.5 bits (140), Expect = 2e-08
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 11 MLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEY-EELGM-EAIWRVE 184
++ KG K++ + YG YL + GG AA+LA N +K+V+ V + +ELGM EA+W +E
Sbjct: 101 IVGKGGMKKELLKTFEDYGVVYLAAPGGCAALLA-NSVKRVDNVYFLDELGMPEAVWELE 159
Query: 185 VENF-PAFIVVDDKGNDFFQE 244
V NF P + +D GN ++E
Sbjct: 160 VNNFGPLIVAMDSHGNSIYEE 180
>sp|Q04718|FUMA_BACST Fumarate hydratase class I, aerobic (Fumarase)
Length = 514
Score = 56.2 bits (134), Expect = 8e-08
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 MLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVEV 187
++ KG ++ +A ++GG YL +IGG A A +CI+ VE V+ E G+ EA+W + V
Sbjct: 419 VMGKGGMGQKTLQALKEHGGVYLNAIGGAAQYYA-DCIEAVEGVDLLEFGIPEAMWHLRV 477
Query: 188 ENFPAFIVVDDKGNDFFQE 244
++F A + +D GN ++
Sbjct: 478 KDFTAVVTMDSHGNSLHED 496
>sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase beta subunit (L-TTD beta)
sp|P0AC35|TTDB_ECOLI L(+)-tartrate dehydratase beta subunit (L-TTD beta)
sp|P0AC36|TTDB_ECOL6 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
Length = 201
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 8 IMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVE 184
+++ KG E C K+ ++ G AVLA ++++E V + ELGM E++W
Sbjct: 98 LVVGKGGMGPLTEEGCQKFKALHVIFPAG-CAVLAATQVEEIEEVHWTELGMPESLWVCR 156
Query: 185 VENF-PAFIVVDDKGNDFFQE 244
V+ F P + +D GN+ E
Sbjct: 157 VKEFGPLIVSIDTHGNNLIAE 177
>sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
Length = 201
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 8 IMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVE 184
+++ KG E C K+ ++ G AVLA ++++E V + ELGM E++W
Sbjct: 98 LVVGKGGMGPLTEEGCQKFKALHVIFPAG-CAVLAATQVEEIEEVHWTELGMPESLWVCR 156
Query: 185 VENF-PAFIVVDDKGNDFFQE 244
V+ F P + +D GN+ E
Sbjct: 157 VKEFGPLIVSIDTHGNNLIAE 177
>sp|Q00273|VP2_EHDV1 Outer capsid protein VP2
Length = 971
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 557 LYFDKNCYRALSTILNITNNFIIYCLII 640
LY DK CY+ S ILN+ + F + C +I
Sbjct: 664 LYLDKECYKKESLILNLRSIFSLICFLI 691
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,012,849
Number of Sequences: 369166
Number of extensions: 1467044
Number of successful extensions: 4105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4096
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)