Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B06
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 52 4e-07
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 50 1e-06
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 41 8e-04
sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich ven... 41 0.001
sp|Q8UW25|CRVP1_LAPHA Cysteine-rich venom protein 1 precurs... 41 0.001
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 40 0.001
sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precurs... 40 0.001
sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 pre... 40 0.002
sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor 40 0.002
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 40 0.002
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 52.0 bits (123), Expect = 4e-07
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +3
Query: 9 FICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 119
FIC+YGPAGN+ PY+ GA CS CPK C N+LC
Sbjct: 160 FICDYGPAGNY-PTWPYKQGATCSDCPKDDKCLNSLC 195
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +3
Query: 9 FICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 119
FICNYGP GN+ PY+ GA CS CP C +NLC
Sbjct: 171 FICNYGPGGNY-PTWPYKRGATCSACPNNDKCLDNLC 206
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 41.2 bits (95), Expect = 8e-04
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+ ++C Y PAGN+ ++ PYE G C++CP +C N LC
Sbjct: 165 YYYVCQYCPAGNYVNKINTPYEQGTPCARCP--GNCDNGLC 203
>sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich venom protein 1) (NA-CRVP1)
(Protein G2a)
Length = 239
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+ ++C Y P+GNF + PY++G C CP ++C N LC
Sbjct: 159 YFYVCQYCPSGNFQGKTATPYKLGPPCGDCP--SACDNGLC 197
>sp|Q8UW25|CRVP1_LAPHA Cysteine-rich venom protein 1 precursor (CRVP)
Length = 238
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+L++C Y PAGN + PY+ G +C CP ++C N LC
Sbjct: 158 YLYVCQYCPAGNISSSIATPYKSGPSCGDCP--SACVNGLC 196
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 119
+ F+C Y PAGNF PY G C CP + C N LC
Sbjct: 153 YFFVCQYCPAGNFIGKTATPYTSGTPCGDCP--SDCDNGLC 191
>sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precursor (CRVP)
Length = 238
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+L++C Y PAGN PY+ G +C CP ++C N LC
Sbjct: 158 YLYVCQYCPAGNIRSSIATPYKSGPSCGDCP--SACVNGLC 196
>sp|P54108|CRIS3_HUMAN Cysteine-rich secretory protein 3 precursor (CRISP-3) (SGP28
protein)
Length = 245
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+ ++C Y PAGN+ + PYE GA C+ CP +C + LC
Sbjct: 165 YYYVCQYCPAGNWANRLYVPYEQGAPCASCP--DNCDDGLC 203
>sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor
Length = 238
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+L++C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 158 YLYVCQYCPAGNIRGSIATPYKSGPPCADCP--SACVNRLC 196
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 WLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 119
+L++C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 158 YLYVCQYCPAGNIRGSIATPYKSGPPCADCP--SACVNKLC 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,550,730
Number of Sequences: 369166
Number of extensions: 582106
Number of successful extensions: 1860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1839
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)