Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A08
(160 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34099|KAPC_DICDI cAMP-dependent protein kinase catalyti... 28 5.1
sp|Q17848|I5P1_CAEEL Probable type I inositol-1,4,5-trispho... 28 6.6
>sp|P34099|KAPC_DICDI cAMP-dependent protein kinase catalytic subunit
Length = 648
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 133 KTTNQRTSYLQTANPSTDGLRARHAASIYL--SIIHQHGH*RNNM 5
+T+ T+ T NP T GL +HA S Y +++H H ++++
Sbjct: 238 QTSTTTTTTTTTTNPHTSGLSLQHAHSSYTPSNVLHSPTHFQSSL 282
>sp|Q17848|I5P1_CAEEL Probable type I inositol-1,4,5-trisphosphate 5-phosphatase (5PTase)
Length = 409
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 134 KNHQSTHELFANSQP*YRWSARASRSINIFINNPPAW 24
+N QS E+ N P Y WS S + PAW
Sbjct: 331 ENFQSMFEMHINFPPTYPWSEDPENSETLMKTRAPAW 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,614,124
Number of Sequences: 369166
Number of extensions: 245155
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)