Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A05
(705 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53420|CO4A4_HUMAN Collagen alpha 4(IV) chain precursor 124 2e-28
sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor ... 122 9e-28
sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor 121 2e-27
sp|P08572|CO4A2_HUMAN Collagen alpha 2(IV) chain precursor 121 2e-27
sp|P55787|CO4A4_RABIT Collagen alpha 4(IV) chain 120 3e-27
sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor 120 3e-27
sp|Q7SIB3|CO4A2_BOVIN Collagen alpha 2(IV) chain 120 4e-27
sp|Q29442|CO4A4_BOVIN Collagen alpha 4(IV) chain 120 5e-27
sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain 119 6e-27
sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor 119 1e-26
>sp|P53420|CO4A4_HUMAN Collagen alpha 4(IV) chain precursor
Length = 1690
Score = 124 bits (312), Expect = 2e-28
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+DRSYWL+S P +P+ + +S+C VCE+P Q A HSQ + S CP+ W
Sbjct: 1536 RNDRSYWLASAAPLPMMPLSEEAIRPYVSRCAVCEAPAQAVAVHSQDQ--SIPPCPQTWR 1593
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+MH+ AG + GGQAL SPGSC++ F+ P +EC +CH +++ +F+L
Sbjct: 1594 SLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLT 1653
Query: 365 SLSGQF-FNSTTESQYLEMSDSNMKEILDSISRCVVCTKY 481
++ F+S L+ S + ++ ISRC VC KY
Sbjct: 1654 TVKADLQFSSAPAPDTLKESQAQRQK----ISRCQVCVKY 1689
Score = 47.4 bits (111), Expect = 4e-05
Identities = 32/112 (28%), Positives = 48/112 (42%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT++ + TCP +LW GYS + K+ Q L GSC+ F P CN
Sbjct: 1471 HSQTDQ--EPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIH 1528
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
+ + +++L S + L M + + I +SRC VC
Sbjct: 1529 QVCHYAQRNDRSYWLASAAP-----------LPMMPLSEEAIRPYVSRCAVC 1569
>sp|P17140|CO4A2_CAEEL Collagen alpha 2(IV) chain precursor (Lethal protein 2)
Length = 1758
Score = 122 bits (306), Expect = 9e-28
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+++SYWLS+ E +P++ ++ +S+C VCE+P A HSQT + + CP W
Sbjct: 1602 RNEKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPN--CPAGWS 1659
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF MH+ AG + GGQ+ SSPGSC++ F+ P IECN SCH++++ +F+L
Sbjct: 1660 SLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLT 1719
Query: 365 SLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTK 478
++ ESQ L+ + + +SRC VC K
Sbjct: 1720 TIDNDSEFKVPESQTLKSGNLRTR-----VSRCQVCVK 1752
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/112 (33%), Positives = 49/112 (43%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT CPE +LW GYS + KS Q L GSC+Q F P + C+
Sbjct: 1537 HSQTTEVP--RCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFN 1594
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
+ C++ S Y S S+ + M N +EI ISRC VC
Sbjct: 1595 -NVCNYASRNEKSYWLS----------TSEAIPMMPVNEREIEPYISRCAVC 1635
>sp|P08122|CO4A2_MOUSE Collagen alpha 2(IV) chain precursor
Length = 1707
Score = 121 bits (304), Expect = 2e-27
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+D+SYWLS+ P +P+ ++ +S+C VCE+P A HSQ CP W
Sbjct: 1555 RNDKSYWLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAVAIAVHSQDTSIPH--CPAGWR 1612
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+M+++AG + GGQ+L SPGSC++ F+ P IECN G +CH++++ +F+L
Sbjct: 1613 SLWIGYSFLMYTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLT 1672
Query: 365 SLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTK 478
++ Q F ST + L+ I ISRC VC K
Sbjct: 1673 TIPEQNFQSTPSADTLKAG-----LIRTHISRCQVCMK 1705
Score = 52.0 bits (123), Expect = 2e-06
Identities = 36/112 (32%), Positives = 49/112 (43%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT++ + CP +LW GYS + K+ Q L GSC+ F P + CN G
Sbjct: 1490 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 1547
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
C++ S + Y S + L M +EI ISRC VC
Sbjct: 1548 -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEEEIKPYISRCSVC 1588
>sp|P08572|CO4A2_HUMAN Collagen alpha 2(IV) chain precursor
Length = 1712
Score = 121 bits (303), Expect = 2e-27
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+D+SYWLS+ P +P+ ++ +S+C VCE+P A HSQ S CP W
Sbjct: 1560 RNDKSYWLSTTAPLPMMPVAEDEIKPYISRCSVCEAPAIAIAVHSQD--VSIPHCPAGWR 1617
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+MH++AG + GGQ+L SPGSC++ F+ P IECN G +CH++++ +F+L
Sbjct: 1618 SLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLT 1677
Query: 365 SLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTK 478
++ Q F + + L+ I ISRC VC K
Sbjct: 1678 TIPEQSFQGSPSADTLKAG-----LIRTHISRCQVCMK 1710
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/112 (32%), Positives = 48/112 (42%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT++ + CP +LW GYS + K+ Q L GSC+ F P + CN G
Sbjct: 1495 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 1552
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
C++ S + Y S + L M EI ISRC VC
Sbjct: 1553 -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEDEIKPYISRCSVC 1593
>sp|P55787|CO4A4_RABIT Collagen alpha 4(IV) chain
Length = 623
Score = 120 bits (302), Expect = 3e-27
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+D+SYWL+S P +P+ ++ +S+C VCE+P Q A HSQ + S CP W
Sbjct: 469 RNDKSYWLASAGPLPMMPLSEEEIRPYISRCAVCEAPAQAVAVHSQDQ--SIPPCPRAWR 526
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+MH+ AG + GGQAL SPGSC++ F+ P +EC +CH +++ +F+L
Sbjct: 527 SLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANEYSFWLT 586
Query: 365 SLSG--QFFNSTTESQYLEMSDSNMKEILDSISRCVVCTKY 481
++ Q F++ + E K ISRC VC KY
Sbjct: 587 TVPPDLQVFSAPSPDTLKESQAQRQK-----ISRCQVCVKY 622
Score = 50.4 bits (119), Expect = 4e-06
Identities = 35/112 (31%), Positives = 48/112 (42%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT++ + CP +LW GYS + K+ Q L GSC+ F P CN
Sbjct: 404 HSQTDQ--EPACPMGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPIFSTLPFAYCNI- 460
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
CH+ + Y + +G L M + +EI ISRC VC
Sbjct: 461 HQVCHYAQRNDKSYWLASAGP----------LPMMPLSEEEIRPYISRCAVC 502
>sp|P27393|CO4A2_ASCSU Collagen alpha 2(IV) chain precursor
Length = 1763
Score = 120 bits (302), Expect = 3e-27
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+D+SYWLS+ P +P+ + +S+C VCE+P A HSQT + + CP W
Sbjct: 1604 RNDKSYWLSTTAPIPMMPVSEGGIEPYISRCAVCEAPANVIAVHSQTIQIPN--CPNGWN 1661
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF MH+ AG + GGQ+LSSPGSC++ F+ P IECN +CH++++ +F+L
Sbjct: 1662 SLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGTCHYFANKFSFWLT 1721
Query: 365 SLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTKYKNFQ 493
++ ES+ L+ + +SRC VC + + Q
Sbjct: 1722 TIEDDQQFRIPESETLKAGSLRTR-----VSRCQVCIRSPDVQ 1759
Score = 48.1 bits (113), Expect = 2e-05
Identities = 33/112 (29%), Positives = 50/112 (44%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT CP V+LW GYS + KS Q L GSC+ F P + C+
Sbjct: 1539 HSQTSEVPQ--CPPGMVKLWDGYSLLYIEGNEKSHNQDLGHAGSCLSRFSTMPFLFCDVN 1596
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
+ C++ S + Y + ++T + +S+ ++ ISRC VC
Sbjct: 1597 -NVCNYASRNDKSY-------WLSTTAPIPMMPVSEGGIEPY---ISRCAVC 1637
>sp|Q7SIB3|CO4A2_BOVIN Collagen alpha 2(IV) chain
Length = 227
Score = 120 bits (301), Expect = 4e-27
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+D+SYWLS+ P +P+ + +S+C VCE+P A HSQ S CP W
Sbjct: 75 RNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQD--VSIPHCPAGWR 132
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+MH++AG + GGQ+L SPGSC++ F+ P IECN +CH++++ +F+L
Sbjct: 133 SLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLT 192
Query: 365 SLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTK 478
++ Q F T + L+ I ISRC VC K
Sbjct: 193 TIPEQSFQGTPSADTLKAG-----LIRTHISRCQVCMK 225
Score = 50.8 bits (120), Expect = 3e-06
Identities = 35/112 (31%), Positives = 49/112 (43%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT++ + CP +LW GYS + K+ Q L GSC+ F P + CN G
Sbjct: 10 HSQTDQ--EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPG 67
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
C++ S + Y S + L M ++I ISRC VC
Sbjct: 68 -DVCYYASRNDKSYWLSTTAP----------LPMMPVAEEDIRPYISRCSVC 108
>sp|Q29442|CO4A4_BOVIN Collagen alpha 4(IV) chain
Length = 453
Score = 120 bits (300), Expect = 5e-27
Identities = 64/160 (40%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Frame = +2
Query: 11 RSDRSYWLSSLEP-ESVPMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPENWV 187
R+DRSYWL+S P P+ ++ +S+C VCE+P Q A HSQ + S CP W
Sbjct: 299 RNDRSYWLASTAPLPMTPLSEDEIRPYISRCAVCEAPAQAVAVHSQDQ--SIPPCPRAWR 356
Query: 188 QLWKGYSFVMHSSAG-KSGGQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFYLR 364
LW GYSF+MH+ AG + GGQAL SPGSC++ F+ P +EC +CH +++ +F+L
Sbjct: 357 SLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLT 416
Query: 365 SLSGQF-FNSTTESQYLEMSDSNMKEILDSISRCVVCTKY 481
++ F+S L+ S + ++ ISRC VC K+
Sbjct: 417 TVRPDLQFSSAPLPDTLKESHAQRQK----ISRCQVCVKH 452
Score = 49.7 bits (117), Expect = 8e-06
Identities = 36/112 (32%), Positives = 49/112 (43%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT+ + TCP +LW GYS + ++ Q L GSC+ F P CN
Sbjct: 234 HSQTD--GEPTCPMGMPRLWTGYSLLYLEGQERAHNQDLGLAGSCLPIFSTLPFAYCNI- 290
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
CH Y R ++ ++T L M+ + EI ISRC VC
Sbjct: 291 HQVCH--------YARRNDRSYWLASTAP--LPMTPLSEDEIRPYISRCAVC 332
>sp|Q28084|CO4A3_BOVIN Collagen alpha 3(IV) chain
Length = 471
Score = 119 bits (299), Expect = 6e-27
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 9/167 (5%)
Frame = +2
Query: 11 RSDRSYWLSSLEPESVPMDVSQMHKR-----LSQCVVCESPTQPYAFHSQTERFSDVT-C 172
R+D SYWLS+ P +PMD++ + R +S+C VCE P A HSQT +D+ C
Sbjct: 317 RNDYSYWLST--PAMIPMDMAPITGRALEPYISRCTVCEGPAIAIAVHSQT---TDIPPC 371
Query: 173 PENWVQLWKGYSFVMHSSAGKSG-GQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGN 349
P W+ LWKG+SF+M +SAG G GQAL+SPGSC++ F+ P IEC +G +C+++S+
Sbjct: 372 PAGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIEC-HGRGTCNYYSNSY 430
Query: 350 AFYLRSLSGQFFNSTTESQYLEMSDSNMK--EILDSISRCVVCTKYK 484
+F+L SL + + + S +K E+ + ISRC VC K +
Sbjct: 431 SFWLASLD-------PKRMFRKPIPSTVKAGELENIISRCQVCMKMR 470
Score = 45.1 bits (105), Expect = 2e-04
Identities = 31/112 (27%), Positives = 53/112 (47%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT +CPE L+ G+S + ++ GQ L + GSC+Q F P + CN
Sbjct: 252 HSQTTAIP--SCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTMPFLFCN-- 307
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
++ +++ N + ++ ST ++M+ + + ISRC VC
Sbjct: 308 INDVCNFASRNDY-------SYWLSTPAMIPMDMAPITGRALEPYISRCTVC 352
>sp|P29400|CO4A5_HUMAN Collagen alpha 5(IV) chain precursor
Length = 1685
Score = 119 bits (297), Expect = 1e-26
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 4/160 (2%)
Frame = +2
Query: 11 RSDRSYWLSSLEPESV---PMDVSQMHKRLSQCVVCESPTQPYAFHSQTERFSDVTCPEN 181
R+D SYWLS+ EP + P+ + +S+C VCE+P A HSQT + CP+
Sbjct: 1532 RNDYSYWLSTPEPMPMSMQPLKGQSIQPFISRCAVCEAPAVVIAVHSQTIQIPH--CPQG 1589
Query: 182 WVQLWKGYSFVMHSSAGKSG-GQALSSPGSCIQYFKFHPLIECNNGMSSCHHWSDGNAFY 358
W LW GYSF+MH+SAG G GQAL+SPGSC++ F+ P IEC +G +C+++++ +F+
Sbjct: 1590 WDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIEC-HGRGTCNYYANSYSFW 1648
Query: 359 LRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVCTK 478
L ++ S +S+ L+ D + ISRC VC K
Sbjct: 1649 LATVDVSDMFSKPQSETLKAGDLRTR-----ISRCQVCMK 1683
Score = 48.1 bits (113), Expect = 2e-05
Identities = 31/112 (27%), Positives = 55/112 (49%)
Frame = +2
Query: 137 HSQTERFSDVTCPENWVQLWKGYSFVMHSSAGKSGGQALSSPGSCIQYFKFHPLIECNNG 316
HSQT CP+ +Q+++G+S + ++ GQ L + GSC++ F P + CN
Sbjct: 1467 HSQTTDAPQ--CPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCN-- 1522
Query: 317 MSSCHHWSDGNAFYLRSLSGQFFNSTTESQYLEMSDSNMKEILDSISRCVVC 472
+++ +++ N + ++ ST E + M + I ISRC VC
Sbjct: 1523 INNVCNFASRNDY-------SYWLSTPEPMPMSMQPLKGQSIQPFISRCAVC 1567
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,848,495
Number of Sequences: 369166
Number of extensions: 1727612
Number of successful extensions: 4427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4352
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)