Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L21
(836 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 516 e-146
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 516 e-146
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 516 e-146
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 515 e-146
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 496 e-140
sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondria... 488 e-138
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 470 e-132
sp|P26854|ATPAM_MARPO ATP synthase alpha chain, mitochondrial 463 e-130
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 462 e-130
sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondria... 461 e-129
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 516 bits (1330), Expect = e-146
Identities = 263/277 (94%), Positives = 273/277 (98%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 171 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 230
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+P
Sbjct: 231 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 290
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGC+MGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 291 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 350
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+D +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 351 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 410
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQT+AMKQVAG MKLELAQYREVAAFA
Sbjct: 411 GLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFA 447
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 516 bits (1328), Expect = e-146
Identities = 263/277 (94%), Positives = 273/277 (98%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 161 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 220
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+P
Sbjct: 221 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 280
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGC+MGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 281 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 340
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+D +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 341 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 400
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQT+AMKQVAG MKLELAQYREVAAFA
Sbjct: 401 GLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFA 437
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 516 bits (1328), Expect = e-146
Identities = 263/277 (94%), Positives = 273/277 (98%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 171 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 230
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+P
Sbjct: 231 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 290
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGC+MGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 291 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 350
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+D +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 351 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 410
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQT+AMKQVAG MKLELAQYREVAAFA
Sbjct: 411 GLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFA 447
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 515 bits (1326), Expect = e-146
Identities = 262/277 (94%), Positives = 273/277 (98%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 171 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 230
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFNDG+DEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+P
Sbjct: 231 RFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 290
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGC+MGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 291 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 350
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+D +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 351 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 410
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQT+AMKQVAG MKLELAQYREVAAFA
Sbjct: 411 GLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFA 447
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 496 bits (1276), Expect = e-140
Identities = 252/277 (90%), Positives = 265/277 (95%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV +KAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 170 RVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQK 229
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFN+ DE KKLYCIYVAIGQKRSTVAQ+VKRL+++ AM Y+++VSATASDAAPLQYL+P
Sbjct: 230 RFNEAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLAP 289
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGCAMGEYFRD GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 290 YSGCAMGEYFRDKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 349
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKMS GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 350 RAAKMSPAMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 409
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQTKAMKQVAG MKLELAQYREVAAFA
Sbjct: 410 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFA 446
>sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 488 bits (1256), Expect = e-138
Identities = 252/277 (90%), Positives = 262/277 (94%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 172 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 231
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
RFNDGTDEKKKLYCIYVAIGQKR L++ADAMKYTIVVS TASDAAPLQYL+P
Sbjct: 232 RFNDGTDEKKKLYCIYVAIGQKR---------LTDADAMKYTIVVSRTASDAAPLQYLAP 282
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
YSGC+MGEYFRDNG HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 283 YSGCSMGEYFRDNGTHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 342
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+D +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 343 RAAKMNDHFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 402
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQT+AMKQVAG MKLELAQYREVAAFA
Sbjct: 403 GLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFA 439
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 470 bits (1209), Expect = e-132
Identities = 232/277 (83%), Positives = 263/277 (94%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV LKAPGI+PRTSV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTAIA+DTI+N K
Sbjct: 156 RVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHK 215
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
R+N+ +DE KKLYC+YVA+GQKRSTVAQLV++L D++KY+I+V+ATAS++APLQYL+P
Sbjct: 216 RWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLAP 275
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
+SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 276 FSGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 335
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKMS +GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAINV
Sbjct: 336 RAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINV 395
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQ KAMKQVAG++KL LAQYREVA+FA
Sbjct: 396 GLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFA 432
>sp|P26854|ATPAM_MARPO ATP synthase alpha chain, mitochondrial
Length = 513
Score = 463 bits (1192), Expect = e-130
Identities = 239/278 (85%), Positives = 257/278 (92%), Gaps = 1/278 (0%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
RV +KAPGII R SV EPMQTG+KAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTI+NQK
Sbjct: 129 RVEVKAPGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQK 188
Query: 184 RFN-DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 360
+ N GT + +KLYC+YVAIGQKRSTVAQLVK LS A A++Y+I+V+ATASD APLQ+L+
Sbjct: 189 QINAQGTSDSEKLYCVYVAIGQKRSTVAQLVKILSEAGALEYSIIVAATASDPAPLQFLA 248
Query: 361 PYSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 540
PYSGCAMGEYFRDNG HALIIYDDLSKQ+VAYRQMSLLLRRPPGREA+PGDVFYLHSRLL
Sbjct: 249 PYSGCAMGEYFRDNGMHALIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLL 308
Query: 541 ERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 720
ERAAKMSD G GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY+G RPAIN
Sbjct: 309 ERAAKMSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYRGSRPAIN 368
Query: 721 VGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
VGLSVSRVGSAAQ KAMKQV G +KLELAQYREVAAFA
Sbjct: 369 VGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFA 406
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 462 bits (1189), Expect = e-130
Identities = 230/278 (82%), Positives = 260/278 (93%)
Frame = +1
Query: 1 SRVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQ 180
SR +KAPGI+PR SV EP+QTG+K+VD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQ
Sbjct: 167 SRAQVKAPGILPRRSVHEPVQTGLKSVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ 226
Query: 181 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 360
KR+N+GTDE KKLYC+YVA+GQKRSTVAQLV+ L DA+KY+I+V+ATAS+AAPLQY++
Sbjct: 227 KRWNNGTDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDALKYSIIVAATASEAAPLQYIA 286
Query: 361 PYSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 540
P++ A+GE+FRDNG+HALIIYDDLSKQAVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLL
Sbjct: 287 PFTAAAIGEWFRDNGRHALIIYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLL 346
Query: 541 ERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 720
ERAAKMS+ GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE ELFYKGIRPAIN
Sbjct: 347 ERAAKMSEKNGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAIN 406
Query: 721 VGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
VGLSVSRVGSAAQ KA+KQVAG +KL LAQYREVAAFA
Sbjct: 407 VGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFA 444
>sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondrial precursor
Length = 551
Score = 461 bits (1185), Expect = e-129
Identities = 227/277 (81%), Positives = 258/277 (93%)
Frame = +1
Query: 4 RVFLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQK 183
R LKAPGI+PR SV +P+QTG+K+VD++VPIGRGQRELIIGDRQTGKTA+A+D I+NQK
Sbjct: 169 RAQLKAPGILPRQSVNQPVQTGLKSVDAMVPIGRGQRELIIGDRQTGKTAVALDAILNQK 228
Query: 184 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSP 363
R+N G+DE KKLYC+YVA+GQKRSTVAQLVK L DAMKY+IVV+ATAS+AAPLQYL+P
Sbjct: 229 RWNSGSDEDKKLYCVYVAVGQKRSTVAQLVKTLEENDAMKYSIVVAATASEAAPLQYLAP 288
Query: 364 YSGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 543
++G +GEYFRDNGKH+L+I+DDL+KQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 289 FTGACVGEYFRDNGKHSLVIFDDLTKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 348
Query: 544 RAAKMSDVYGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 723
RAAKM+ +GGGS+TALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELFYKG+RPAINV
Sbjct: 349 RAAKMNKTHGGGSMTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFYKGVRPAINV 408
Query: 724 GLSVSRVGSAAQTKAMKQVAGRMKLELAQYREVAAFA 834
GLSVSRVGSAAQ KAMKQVAG +KL LAQYREVAAFA
Sbjct: 409 GLSVSRVGSAAQLKAMKQVAGSLKLFLAQYREVAAFA 445
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,480,494
Number of Sequences: 369166
Number of extensions: 1910318
Number of successful extensions: 6325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5822
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)