Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A02
(258 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 86 2e-17
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 86 3e-17
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 86 3e-17
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 85 6e-17
sp|P13471|RS14_RAT 40S ribosomal protein S14 84 8e-17
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 84 8e-17
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 84 8e-17
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 84 1e-16
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 84 1e-16
sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59) 83 2e-16
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 86.3 bits (212), Expect = 2e-17
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTP
Sbjct: 74 MLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133
Query: 182 IPHDTT 199
IP D+T
Sbjct: 134 IPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 85.5 bits (210), Expect = 3e-17
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTP
Sbjct: 74 MLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133
Query: 182 IPHDTT 199
IP D+T
Sbjct: 134 IPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 85.5 bits (210), Expect = 3e-17
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTP
Sbjct: 74 MLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133
Query: 182 IPHDTT 199
IP D+T
Sbjct: 134 IPTDST 139
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTP
Sbjct: 73 MLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 132
Query: 182 IPHDTT 199
+P D+T
Sbjct: 133 VPTDST 138
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 84.3 bits (207), Expect = 8e-17
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+H+++RATGG +++T SGMKIGRIEDVTP
Sbjct: 75 MLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP 134
Query: 182 IPHDTT 199
IP D+T
Sbjct: 135 IPSDST 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 84.3 bits (207), Expect = 8e-17
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCK+LGITA+H+++RATGG +++T SGMKIGRIEDVTP
Sbjct: 75 MLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP 134
Query: 182 IPHDTT 199
IP D+T
Sbjct: 135 IPSDST 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 84.3 bits (207), Expect = 8e-17
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTP
Sbjct: 74 MLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTP 133
Query: 182 IPHDTT 199
IP D+T
Sbjct: 134 IPSDST 139
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 83.6 bits (205), Expect = 1e-16
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLA+QDVA+RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTP
Sbjct: 74 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133
Query: 182 IPHDTT 199
+P D+T
Sbjct: 134 VPTDST 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 83.6 bits (205), Expect = 1e-16
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA+RCKQLGI A+H+++RATGGT+++T +GMKIGRIEDVTP
Sbjct: 76 MLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTP 135
Query: 182 IPHDTT 199
IP D T
Sbjct: 136 IPSDCT 141
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
Length = 137
Score = 83.2 bits (204), Expect = 2e-16
Identities = 38/66 (57%), Positives = 50/66 (75%)
Frame = +2
Query: 2 MLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTP 181
MLAAQDVA +CK++GITAVH+++RATGGT+S+T SG++IGRIEDVTP
Sbjct: 61 MLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTP 120
Query: 182 IPHDTT 199
+P D+T
Sbjct: 121 VPSDST 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,940,038
Number of Sequences: 369166
Number of extensions: 311627
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)