Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J20
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BW91|NUDT9_HUMAN ADP-ribose pyrophosphatase, mitochond... 114 7e-26
sp|Q8BVU5|NUDT9_MOUSE ADP-ribose pyrophosphatase, mitochond... 113 1e-25
sp|Q5XIG0|NUDT9_RAT ADP-ribose pyrophosphatase, mitochondri... 113 1e-25
sp|Q09297|NDX6_CAEEL Putative nudix hydrolase 6 96 2e-20
sp|Q8N2Z3|NUD9P_HUMAN Hypothetical nucleoside diphosphate-l... 85 4e-17
sp|O94759|TRPM2_HUMAN Transient receptor potential cation c... 79 2e-15
sp|Q91YD4|TRPM2_MOUSE Transient receptor potential cation c... 77 9e-15
sp|P35942|RRPO_ROTGI RNA-directed RNA polymerase subunit VP... 30 1.3
sp|P24683|RBS_CYLSN Ribulose bisphosphate carboxylase small... 29 3.8
sp|Q58549|ADPP_METJA ADP-ribose pyrophosphatase (ADP-ribose... 28 5.0
>sp|Q9BW91|NUDT9_HUMAN ADP-ribose pyrophosphatase, mitochondrial precursor (ADP-ribose
diphosphatase) (Adenosine diphosphoribose
pyrophosphatase) (ADPR-PPase) (ADP-ribose
phosphohydrolase) (Nucleoside diphosphate-linked moiety
X motif 9) (Nudix motif 9)
Length = 350
Score = 114 bits (285), Expect = 7e-26
Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 EKKELYEKIDYLFVNG-TTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGD 179
EK+E+ EK+ LF IY GYVDDPRNTDNAW+ET AVN+HD+ G+ + + LEAGD
Sbjct: 245 EKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGD 304
Query: 180 DAAAIRWIDLNKELKLYASHLSILSDLVDKHGAHW 284
DA ++W+D+N +LKLYASH + + +K AHW
Sbjct: 305 DAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 339
>sp|Q8BVU5|NUDT9_MOUSE ADP-ribose pyrophosphatase, mitochondrial precursor (ADP-ribose
diphosphatase) (Adenosine diphosphoribose
pyrophosphatase) (ADPR-PPase) (ADP-ribose
phosphohydrolase) (Nucleoside diphosphate-linked moiety
X motif 9) (Nudix motif 9)
Length = 350
Score = 113 bits (283), Expect = 1e-25
Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 EKKELYEKIDYLFVNG-TTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGD 179
EK+E+ EK+ LF IY GYVDDPRNTDNAW+ET AVN+HD+ G+++ + LEAGD
Sbjct: 245 EKREIEEKLHALFSQEHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGETMDNLTLEAGD 304
Query: 180 DAAAIRWIDLNKELKLYASHLSILSDLVDKHGAHW 284
DA ++W+D++ +LKLYASH + + +K AHW
Sbjct: 305 DAGKVKWVDISDQLKLYASHSQFIKLVAEKRDAHW 339
>sp|Q5XIG0|NUDT9_RAT ADP-ribose pyrophosphatase, mitochondrial precursor (ADP-ribose
diphosphatase) (Adenosine diphosphoribose
pyrophosphatase) (ADPR-PPase) (ADP-ribose
phosphohydrolase) (Nucleoside diphosphate-linked moiety
X motif 9) (Nudix motif 9)
Length = 350
Score = 113 bits (283), Expect = 1e-25
Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 EKKELYEKIDYLFVNG-TTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGD 179
EK+E+ EK+ LF IY GYVDDPRNTDNAW+ET AVN+HD+ G+++ + LEAGD
Sbjct: 245 EKREIEEKLHALFSQEHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGETMDNLTLEAGD 304
Query: 180 DAAAIRWIDLNKELKLYASHLSILSDLVDKHGAHW 284
DA ++W+D++ +LKLYASH + + +K AHW
Sbjct: 305 DAGKVKWVDISDQLKLYASHSQFIKLVAEKRDAHW 339
>sp|Q09297|NDX6_CAEEL Putative nudix hydrolase 6
Length = 260
Score = 96.3 bits (238), Expect = 2e-20
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +3
Query: 21 EKIDYLFVNGTTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGDDAAAIRW 200
E +D L+ NG +Y GYVDDPRNTDNAW+ETV NFHD G L + L+AGDDA A+RW
Sbjct: 176 ENLDELWNNGKELYRGYVDDPRNTDNAWMETVVFNFHDSKG-LLKNVALQAGDDAKALRW 234
Query: 201 IDLNKELKLYASHLSILSDLVDKH 272
I +N LYASH + L + H
Sbjct: 235 IAVNSNEPLYASHSHFIDLLKESH 258
>sp|Q8N2Z3|NUD9P_HUMAN Hypothetical nucleoside diphosphate-linked moiety X motif 9P1
Length = 120
Score = 85.1 bits (209), Expect = 4e-17
Identities = 40/75 (53%), Positives = 52/75 (69%)
Frame = +3
Query: 57 IYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGDDAAAIRWIDLNKELKLYAS 236
+Y GYVDD RNTDN WIET AVN+ D+ D L LEAGDDA ++W+D+N +L+LYAS
Sbjct: 49 VYKGYVDDSRNTDNCWIETEAVNYRDEIMDHL---PLEAGDDAKKVKWVDINDKLELYAS 105
Query: 237 HLSILSDLVDKHGAH 281
+ + +K GAH
Sbjct: 106 LSQFIQLVAEKRGAH 120
>sp|O94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2
(Long transient receptor potential channel 2) (LTrpC2)
(LTrpC-2) (Transient receptor potential channel 7)
(TrpC7) (Estrogen-responsive element associated gene
protein 1)
Length = 1503
Score = 79.3 bits (194), Expect = 2e-15
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = +3
Query: 6 KKELYEKIDYLFVNGTTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSL----AQIKLEA 173
++E + + L G +Y GY+DDPRNTDNAWIETVAV+ H +D + + L A
Sbjct: 1407 RQEHWPSFENLLKCGMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSNLHA 1466
Query: 174 GDDAAAIRWIDLNKELKLYASHLSILSDLVDKHGAHW 284
D A+IRW +++ + LYA+H ++L + GAH+
Sbjct: 1467 CDSGASIRWQVVDRRIPLYANHKTLLQKAAAEFGAHY 1503
>sp|Q91YD4|TRPM2_MOUSE Transient receptor potential cation channel subfamily M member 2
(Long transient receptor potential channel 2) (LTrpC2)
(LTrpC-2) (Transient receptor potential channel 7)
(TrpC7)
Length = 1507
Score = 77.4 bits (189), Expect = 9e-15
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Frame = +3
Query: 6 KKELYEKIDYLFVNGTTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAG--- 176
++E + + L + GT +Y GYVDDPRNTDNAWIETVAV+ H +D + + +LE
Sbjct: 1404 RQEFWVAFETLLMQGTEVYKGYVDDPRNTDNAWIETVAVSIHFQDQNDMELKRLEENLHT 1463
Query: 177 --------DDAAAIRWIDLNKELKLYASHLSILSDLVDKHGAHW 284
D + W +++ + LYA+H +IL + GAH+
Sbjct: 1464 HDPKELTRDLKLSTEWQVVDRRIPLYANHKTILQKVASLFGAHF 1507
>sp|P35942|RRPO_ROTGI RNA-directed RNA polymerase subunit VP1 (Inner layer protein VP1)
(Core protein VP1)
Length = 1159
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 EKKELYEKIDYLF-VNGTTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEA 173
E L EKI+ L + T+Y G D RN +W+ T + ++ S+ +I+L+A
Sbjct: 67 ECSTLDEKIETLLRIRYFTVYVGDKSDKRNIIRSWLSTTINRLNVEEYASIQEIELQA 124
>sp|P24683|RBS_CYLSN Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit)
Length = 139
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/87 (19%), Positives = 39/87 (44%)
Frame = +3
Query: 9 KELYEKIDYLFVNGTTIYTGYVDDPRNTDNAWIETVAVNFHDKDGDSLAQIKLEAGDDAA 188
+++ ++++Y G + + DDP +N W E + D + +L+ A
Sbjct: 17 EQIEKQVNYAISKGWAMNVEWTDDPHPRNNYW-ELWGLPLFDIKDPASVMFELQEARKAC 75
Query: 189 AIRWIDLNKELKLYASHLSILSDLVDK 269
A +I +N Y + ++S +V++
Sbjct: 76 AAGYIRMNAFDASYGTESCVMSFIVNR 102
>sp|Q58549|ADPP_METJA ADP-ribose pyrophosphatase (ADP-ribose diphosphatase) (Adenosine
diphosphoribose pyrophosphatase) (ADPR-PPase)
(ADP-ribose phosphohydrolase)
Length = 169
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 162 KLEAGDDAAAIRWIDLNKELKLYASHLSILSD 257
+L+AGDDA + DLN KL H I+ D
Sbjct: 131 ELKAGDDAKEAEFFDLNNLPKLAFDHEKIIKD 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,885,216
Number of Sequences: 369166
Number of extensions: 661214
Number of successful extensions: 1787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)