Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L15
(909 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21358|RMAR_CANGA Mitochondrial ribosomal protein VAR1 31 5.5
sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor... 30 7.1
sp|Q6BZE1|ATG20_DEBHA Autophagy-related protein 20 30 7.1
sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen) 30 9.3
sp|Q8D3H7|CARA_WIGBR Carbamoyl-phosphate synthase small cha... 30 9.3
>sp|P21358|RMAR_CANGA Mitochondrial ribosomal protein VAR1
Length = 339
Score = 30.8 bits (68), Expect = 5.5
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 5/181 (2%)
Frame = +3
Query: 150 FNKKISPFKIYLKYIENN--ILT---GIITNNSDKNGLSPTYQEIEIQTQFDIDNKLGER 314
+NKK+ I LKY+ NN I+T ++ NN NGL YQ +T +I KL +
Sbjct: 160 YNKKVIIEPIKLKYLYNNNEIMTKYISLLDNNKYNNGLLMEYQ----RTLNNIMPKLNDH 215
Query: 315 SPPNGALEEIDISVRKIKSFNFQWFYGSI*GNIVSTRTIXXXXXXXXXXXXXXRGSIISS 494
+ + I+ ++ K+K N + NI + I ++
Sbjct: 216 NISMNYINNIN-NINKLKYNNILLNNNNNINNIYNNININNNMNLLMFKYLIGWSIMLKG 274
Query: 495 YFVPKINVDQVSREYCQSITYDDEEDAQTDMGISNNEFFCGSAIENNILTGNITNNSDKN 674
N+ ++S Y + T+++++ G NN F NN + NN +KN
Sbjct: 275 RL--NKNISRISTTYLNNGTFNNKKYL---WGNLNNNFKLNYINSNNNIYN--YNNINKN 327
Query: 675 G 677
G
Sbjct: 328 G 328
>sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor 8) (MFG-E8) (MFGM) (Sperm
surface protein SP47) (PP47)
Length = 409
Score = 30.4 bits (67), Expect = 7.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 573 AQTDMGISNNEFFCGSAIENNILTGNITNNSDKNGLSPT 689
A +D G+S E+ A+E I GN+ NNS K + T
Sbjct: 344 AYSDDGVSWTEYRDQGALEGKIFPGNLDNNSHKKNMFET 382
>sp|Q6BZE1|ATG20_DEBHA Autophagy-related protein 20
Length = 625
Score = 30.4 bits (67), Expect = 7.1
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 618 SAIENNILTGNITNNSDKNGLSPTYQEIEIQTQFDIDNNLGERSPPDGAVEEIDISARKI 797
S I NN+L N N +D+NGL Y + I F++++N+ S E++ ++
Sbjct: 214 SLIPNNLLLANPVNPTDQNGL---YSLLPIVNGFELNSNIDNISSLHKLNEDLHKLNEQV 270
Query: 798 SFA*LKAEQLLHSH 839
L+ EQ H
Sbjct: 271 HVFELRKEQNERRH 284
>sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen)
Length = 504
Score = 30.0 bits (66), Expect = 9.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 578 LCIFFIIISNTLTIFTRYLINIYFWN 501
L +FFII+SNT+T+ Y+ Y+ N
Sbjct: 6 LILFFIILSNTITVIHGYVRGCYYTN 31
>sp|Q8D3H7|CARA_WIGBR Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 376
Score = 30.0 bits (66), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 110 LTKYPFSHKFSSTKELINLSCRLT 39
+ Y F KFS K LINL CR+T
Sbjct: 188 IVAYDFGIKFSIIKNLINLGCRIT 211
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,764,621
Number of Sequences: 369166
Number of extensions: 1833848
Number of successful extensions: 4371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4367
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)