Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A21
(258 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 89 2e-18
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 89 3e-18
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 88 7e-18
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 88 7e-18
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 87 1e-17
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 87 2e-17
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 87 2e-17
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 86 2e-17
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 86 3e-17
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 86 3e-17
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 89.4 bits (220), Expect = 2e-18
Identities = 40/66 (60%), Positives = 49/66 (74%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EIGLWF ++L +YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 89.0 bits (219), Expect = 3e-18
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EIGLWF ++L +YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCA 146
Query: 182 DIWVQE 199
WV E
Sbjct: 147 HDWVYE 152
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 87.8 bits (216), Expect = 7e-18
Identities = 41/66 (62%), Positives = 50/66 (75%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LGAT + S PGTIRGDFA G+N+ HGSDSVESAK+EIGLWFT +++ YKL A
Sbjct: 86 GRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNA 145
Query: 182 DIWVQE 199
W+ E
Sbjct: 146 FGWIYE 151
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 87.8 bits (216), Expect = 7e-18
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESAK+EI LWF ++L EY+ CA
Sbjct: 86 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCA 145
Query: 182 DIWVQE 199
W+ E
Sbjct: 146 QDWIYE 151
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 87.0 bits (214), Expect = 1e-17
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EI LWF ++L +YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 86.7 bits (213), Expect = 2e-17
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSV+SA++EI LWF ++L EYK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 86.7 bits (213), Expect = 2e-17
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EIGLWF ++L +Y CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 86.3 bits (212), Expect = 2e-17
Identities = 39/66 (59%), Positives = 47/66 (71%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EI LWF ++L YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 85.9 bits (211), Expect = 3e-17
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EI LWF ++L +YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCA 146
Query: 182 DIWVQE 199
WV E
Sbjct: 147 HDWVYE 152
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 85.9 bits (211), Expect = 3e-17
Identities = 39/66 (59%), Positives = 47/66 (71%)
Frame = +2
Query: 2 GRALLGATGAIDSLPGTIRGDFAQVAGKNIVHGSDSVESAKREIGLWFTAKDLGEYKLCA 181
GR +LG T DS PGTIRGDF G+NI+HGSDSVESA++EI LWF ++L YK CA
Sbjct: 87 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCA 146
Query: 182 DIWVQE 199
W+ E
Sbjct: 147 QNWIYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,022,799
Number of Sequences: 369166
Number of extensions: 585363
Number of successful extensions: 1561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)