Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O20
(401 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA... 202 2e-52
sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA... 202 2e-52
sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP... 189 1e-48
sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP... 188 4e-48
sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase... 140 7e-34
sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA... 131 4e-31
sp|O60231|DHX16_HUMAN Putative pre-mRNA splicing factor RNA... 92 5e-19
sp|Q7YR39|DHX16_PANTR Putative pre-mRNA splicing factor RNA... 92 5e-19
sp|O45244|DHX16_CAEEL Probable pre-mRNA splicing factor ATP... 89 4e-18
sp|Q10752|CDC28_SCHPO Putative ATP-dependent RNA helicase c... 84 8e-17
>sp|O35286|DHX15_MOUSE Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
Length = 795
Score = 202 bits (515), Expect = 2e-52
Identities = 91/118 (77%), Positives = 107/118 (90%)
Frame = +2
Query: 2 NLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCLDHKP 181
NL R STDF+S+DYY+NIRKALV+G+FMQVAHLER+GHYLTVKDNQ+V LHPST LDHKP
Sbjct: 672 NLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKP 731
Query: 182 EWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERIINRMQN 355
EWVLYNEFVLTTKN+IRT ++KPEWLVK+APQYYDMSNFP C AK ++RII ++Q+
Sbjct: 732 EWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQS 789
>sp|O43143|DHX15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15)
(ATP-dependent RNA helicase #46)
Length = 795
Score = 202 bits (515), Expect = 2e-52
Identities = 91/118 (77%), Positives = 107/118 (90%)
Frame = +2
Query: 2 NLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCLDHKP 181
NL R STDF+S+DYY+NIRKALV+G+FMQVAHLER+GHYLTVKDNQ+V LHPST LDHKP
Sbjct: 672 NLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKP 731
Query: 182 EWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERIINRMQN 355
EWVLYNEFVLTTKN+IRT ++KPEWLVK+APQYYDMSNFP C AK ++RII ++Q+
Sbjct: 732 EWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQS 789
>sp|O22899|DHX15_ARATH Putative pre-mRNA splicing factor ATP-dependent RNA helicase
Length = 729
Score = 189 bits (481), Expect = 1e-48
Identities = 82/120 (68%), Positives = 103/120 (85%)
Frame = +2
Query: 2 NLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCLDHKP 181
NL+ STDF+S+DYYVNIRKA+++G+FMQVAHLER+GHYLTVKDNQ+VHLHPS CLDHKP
Sbjct: 603 NLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP 662
Query: 182 EWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERIINRMQNGK 361
EWV+YNE+VLTT+NFIRTV +++ EWLV VA YYD+SNFP C AK +E++ + + K
Sbjct: 663 EWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKREREK 722
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP-dependent RNA helicase
F56D2.6
Length = 739
Score = 188 bits (477), Expect = 4e-48
Identities = 85/117 (72%), Positives = 101/117 (86%)
Frame = +2
Query: 2 NLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCLDHKP 181
NLRR STDF S+DYY+NIRKALV+GFFMQVAHLERSGHY+TVKDNQ+V+LHPST LDHKP
Sbjct: 616 NLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVLDHKP 675
Query: 182 EWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERIINRMQ 352
EW LYNEFVLTTKNFIRTV +V+PEWL+++APQYYD+ NFP K + ++ +Q
Sbjct: 676 EWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDNFPDGDTKRKLTTVMQTLQ 732
>sp|P53131|PRP43_YEAST Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1)
Length = 767
Score = 140 bits (354), Expect = 7e-34
Identities = 73/128 (57%), Positives = 92/128 (71%), Gaps = 8/128 (6%)
Frame = +2
Query: 2 NLRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGH--YLTVKDNQIVHLHPSTCLDH 175
NL ++TD+ S Y+ NIRKAL SGFFMQVA +RSG Y+TVKDNQ V +HPST L H
Sbjct: 631 NLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVLGH 689
Query: 176 KPEWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERI------ 337
EWV+YNEFVLT+KN+IRTV V+PEWL+++AP YYD+SNF K +ERI
Sbjct: 690 DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDR 749
Query: 338 INRMQNGK 361
+N ++ GK
Sbjct: 750 LNELKQGK 757
>sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA helicase prp43
Length = 735
Score = 131 bits (330), Expect = 4e-31
Identities = 61/96 (63%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Frame = +2
Query: 17 STDFSSKDYYVNIRKALVSGFFMQVAHLERSG-HYLTVKDNQIVHLHPSTCLDHKPEWVL 193
ST F K+YYVNIR+ALVSGFFMQVA +G +Y+T+KDNQ+V LHPS L PEWV+
Sbjct: 614 STPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTPEWVV 673
Query: 194 YNEFVLTTKNFIRTVCEVKPEWLVKVAPQYYDMSNF 301
YNEFVLTTK+FIR V ++PEWL+++AP YYD+ +F
Sbjct: 674 YNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
>sp|O60231|DHX16_HUMAN Putative pre-mRNA splicing factor RNA helicase (ATP-dependent RNA
helicase #3) (DEAH-box protein 16)
Length = 1041
Score = 91.7 bits (226), Expect = 5e-19
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = +2
Query: 44 YVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCL-DHKPEWVLYNEFVLTTK 220
Y+ +RKA+ +G+F A L RSG Y TVK Q V +HP++ L + +P W+LY+E VLTTK
Sbjct: 936 YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 994
Query: 221 NFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERI 337
F+R V E++ WL++VAP YY AK++ ++I
Sbjct: 995 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKI 1033
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA splicing factor RNA helicase (ATP-dependent RNA
helicase #3) (DEAH-box protein 16)
Length = 1044
Score = 91.7 bits (226), Expect = 5e-19
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = +2
Query: 44 YVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCL-DHKPEWVLYNEFVLTTK 220
Y+ +RKA+ +G+F A L RSG Y TVK Q V +HP++ L + +P W+LY+E VLTTK
Sbjct: 939 YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 997
Query: 221 NFIRTVCEVKPEWLVKVAPQYYDMSNFPPCAAKEIIERI 337
F+R V E++ WL++VAP YY AK++ ++I
Sbjct: 998 EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKI 1036
>sp|O45244|DHX16_CAEEL Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-4
(Sex determination protein mog-4) (Masculinization of
germ line protein 4)
Length = 1008
Score = 88.6 bits (218), Expect = 4e-18
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 5 LRRSSTDFSSKDYYVNIRKALVSGFFMQVAHLERSGHYLTVKDNQIVHLHPSTCL-DHKP 181
L R + S + IRKA+ +G+F V+ L+ +GHY TVK H HP++CL + P
Sbjct: 888 LERVEIETKSSTDTIKIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETP 947
Query: 182 EWVLYNEFVLTTKNFIRTVCEVKPEWLVKVAPQYY 286
WV+Y E V T+K F+R + E++ WL++VAP YY
Sbjct: 948 RWVVYFELVFTSKEFMREMSEIESGWLLEVAPHYY 982
>sp|Q10752|CDC28_SCHPO Putative ATP-dependent RNA helicase cdc28
Length = 1055
Score = 84.3 bits (207), Expect = 8e-17
Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +2
Query: 53 IRKALVSGFFMQVAHLERSGH-YLTVKDNQIVHLHPSTCL-DHKPEWVLYNEFVLTTKNF 226
I+KA+ +G+F A L+RSG Y TVK NQ V++HPS+ + + KP+ ++Y E VLTTK +
Sbjct: 959 IKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEY 1018
Query: 227 IRTVCEVKPEWLVKVAPQYYDMSN 298
R + E++PEWL++++P Y+ N
Sbjct: 1019 CRQITEIQPEWLLEISPHYFKPEN 1042
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,498,049
Number of Sequences: 369166
Number of extensions: 1031557
Number of successful extensions: 2838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)