Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F20
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 414 e-115
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 414 e-115
sp|P02554|TBB_PIG Tubulin beta chain 414 e-115
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 414 e-115
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 414 e-115
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 413 e-115
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 413 e-115
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 412 e-115
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 411 e-115
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 411 e-115
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 414 bits (1064), Expect = e-115
Identities = 201/205 (98%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 414 bits (1064), Expect = e-115
Identities = 201/205 (98%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 414 bits (1064), Expect = e-115
Identities = 201/205 (98%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 414 bits (1064), Expect = e-115
Identities = 201/205 (98%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 414 bits (1064), Expect = e-115
Identities = 201/205 (98%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 71 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 130
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 131 VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 190
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 191 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 250
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 251 MEFTEAESNMNDLVSEYQQYQDATA 275
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 413 bits (1061), Expect = e-115
Identities = 200/205 (97%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 413 bits (1061), Expect = e-115
Identities = 200/205 (97%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 412 bits (1059), Expect = e-115
Identities = 200/205 (97%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 411 bits (1057), Expect = e-115
Identities = 199/205 (97%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMN+LVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNELVSEYQQYQDATA 430
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 411 bits (1057), Expect = e-115
Identities = 199/205 (97%), Positives = 205/205 (100%)
Frame = +1
Query: 1 HHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 180
+HLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL+
Sbjct: 226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALS 285
Query: 181 VPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 360
VPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWI
Sbjct: 286 VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWI 345
Query: 361 PNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 540
PNN+KTAVCDIPPRGLKMSATF+GNSTAIQELF+RVSEQFTAMFRRKAFLHWYTGEGMDE
Sbjct: 346 PNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFRRVSEQFTAMFRRKAFLHWYTGEGMDE 405
Query: 541 MEFTEAESNMNDLVSEYQQYQDATA 615
MEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATA 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,660,038
Number of Sequences: 369166
Number of extensions: 1564979
Number of successful extensions: 4336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4175
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)