Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E20
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JX3|GORS2_MOUSE Golgi reassembly stacking protein 2 (... 259 6e-69
sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly stacking protein 2 (... 259 6e-69
sp|Q9R064|GORS2_RAT Golgi reassembly stacking protein 2 (GR... 259 6e-69
sp|O35254|GR65_RAT Golgi reassembly stacking protein 1 (Gol... 238 2e-62
sp|Q91X51|GR65_MOUSE Golgi reassembly stacking protein 1 (G... 236 5e-62
sp|Q9BQQ3|GR65_HUMAN Golgi reassembly stacking protein 1 (G... 234 1e-61
sp|Q10149|YAT2_SCHPO Hypothetical protein C1D4.02c in chrom... 101 2e-21
sp|P40555|PSD9_YEAST Probable 26S proteasome regulatory sub... 38 0.035
sp|O00233|PSD9_HUMAN 26S proteasome non-ATPase regulatory s... 38 0.035
sp|Q9CR00|PSD9_MOUSE 26S proteasome non-ATPase regulatory s... 37 0.045
>sp|Q99JX3|GORS2_MOUSE Golgi reassembly stacking protein 2 (GRS2) (Golgi reassembly
stacking protein of 55 kDa) (GRASP55)
Length = 451
Score = 259 bits (662), Expect = 6e-69
Identities = 121/214 (56%), Positives = 156/214 (72%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG+ S G EGYHVLRVQE SPGH+AGL+ FFDF+V++ ++L++DN+ LK+LLK
Sbjct: 1 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK 60
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ + I++SKT R + PS WGGQGLLGVSIRFCSF+GANENVWHVL+++
Sbjct: 61 ANVEKPVKMLIYSSKTLELREASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES 120
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
NSPAALAGL+ +DYIIGA+TV+N+ E+ F+LIETH+ + LKLYVYN +TD CREV ITP
Sbjct: 121 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 180
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLPFSNISSIN 690
NS W HRIP+ PF I+
Sbjct: 181 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKIS 214
>sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly stacking protein 2 (GRS2) (Golgi reassembly
stacking protein of 55 kDa) (GRASP55) (p59) (Golgi
phosphoprotein 6) (GOLPH6)
Length = 452
Score = 259 bits (662), Expect = 6e-69
Identities = 121/214 (56%), Positives = 156/214 (72%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG+ S G EGYHVLRVQE SPGH+AGL+ FFDF+V++ ++L++DN+ LK+LLK
Sbjct: 1 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK 60
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ + I++SKT R + PS WGGQGLLGVSIRFCSF+GANENVWHVL+++
Sbjct: 61 ANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES 120
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
NSPAALAGL+ +DYIIGA+TV+N+ E+ F+LIETH+ + LKLYVYN +TD CREV ITP
Sbjct: 121 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 180
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLPFSNISSIN 690
NS W HRIP+ PF I+
Sbjct: 181 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKIS 214
>sp|Q9R064|GORS2_RAT Golgi reassembly stacking protein 2 (GRS2) (Golgi reassembly
stacking protein of 55 kDa) (GRASP55)
Length = 454
Score = 259 bits (662), Expect = 6e-69
Identities = 121/214 (56%), Positives = 156/214 (72%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG+ S G EGYHVLRVQE SPGH+AGL+ FFDF+V++ ++L++DN+ LK+LLK
Sbjct: 1 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSISGSRLNKDNDTLKDLLK 60
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ + I++SKT R + PS WGGQGLLGVSIRFCSF+GANENVWHVL+++
Sbjct: 61 ANVEKPVKMLIYSSKTLELREASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES 120
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
NSPAALAGL+ +DYIIGA+TV+N+ E+ F+LIETH+ + LKLYVYN +TD CREV ITP
Sbjct: 121 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 180
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLPFSNISSIN 690
NS W HRIP+ PF I+
Sbjct: 181 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKIS 214
>sp|O35254|GR65_RAT Golgi reassembly stacking protein 1 (Golgi reassembly stacking
protein of 65 kDa) (GRASP65) (Golgi peripheral membrane
protein p65)
Length = 451
Score = 238 bits (606), Expect = 2e-62
Identities = 109/208 (52%), Positives = 150/208 (72%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG G+S G EG+H+ VQE SP +AGL+ +FDF++ +G ++L+++N+ LK LLK
Sbjct: 1 MGLGASS-EQPAGGEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK 59
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ L +FN KT R VE+VPS WGGQGLLG S+RFCSF A+E+VWHVLD++P
Sbjct: 60 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEP 119
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
+SPAALAGL+ TDYI+G++ +L + E+FF LIE+H+G+ LKL VYN E+D+CREVT+TP
Sbjct: 120 SSPAALAGLRPYTDYIVGSDQILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTP 179
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLPFS 672
N+ W HRIP+ P S
Sbjct: 180 NAAWGGEGSLGCGIGYGYLHRIPTQPSS 207
>sp|Q91X51|GR65_MOUSE Golgi reassembly stacking protein 1 (Golgi reassembly stacking
protein of 65 kDa) (GRASP65) (Golgi peripheral membrane
protein p65)
Length = 446
Score = 236 bits (602), Expect = 5e-62
Identities = 109/208 (52%), Positives = 149/208 (71%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG G+S G EG+H+ VQE SP +AGL+ +FDF++ +G ++L+++N+ LK LLK
Sbjct: 1 MGLGASS-EQPAGGEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK 59
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ L +FN KT R VE+VPS WGGQGLLG S+RFCSF A+E+VWHVLD++P
Sbjct: 60 ANVEKPVKLEVFNMKTMKVREVEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEP 119
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
+SPAALAGL TDYI+G++ +L + E+FF LIE+H+G+ LKL VYN E+D+CREVT+TP
Sbjct: 120 SSPAALAGLCPYTDYIVGSDQILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTP 179
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLPFS 672
N+ W HRIP+ P S
Sbjct: 180 NAAWGGEGSLGCGIGYGYLHRIPTQPSS 207
>sp|Q9BQQ3|GR65_HUMAN Golgi reassembly stacking protein 1 (Golgi reassembly stacking
protein of 65 kDa) (GRASP65) (Golgi peripheral membrane
protein p65) (Golgi phosphoprotein 5) (GOLPH5)
Length = 440
Score = 234 bits (598), Expect = 1e-61
Identities = 106/206 (51%), Positives = 147/206 (71%)
Frame = +1
Query: 49 MGAGSSDLSHNHGNEGYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLK 228
MG G S G EG+H+ VQE SP +AGL+ +FDF++ +G ++L+++N+ LK LLK
Sbjct: 1 MGLGVSAEQPAGGAEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK 60
Query: 229 SNKDKPINLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDP 408
+N +KP+ L +FN KT R VE+VPS WGGQGLLG S+RFCSF A+E VWHVLD++P
Sbjct: 61 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEP 120
Query: 409 NSPAALAGLKQMTDYIIGAETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITP 588
+SPAALAGL+ TDY++G++ +L + E+FF LIE+H+G+ LKL VYN ++D+CREVT+TP
Sbjct: 121 SSPAALAGLRPYTDYVVGSDQILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTP 180
Query: 589 NSTWXXXXXXXXXXXXXXXHRIPSLP 666
N+ W HRIP+ P
Sbjct: 181 NAAWGGEGSLGCGIGYGYLHRIPTQP 206
>sp|Q10149|YAT2_SCHPO Hypothetical protein C1D4.02c in chromosome I
Length = 345
Score = 101 bits (252), Expect = 2e-21
Identities = 58/198 (29%), Positives = 104/198 (52%), Gaps = 3/198 (1%)
Frame = +1
Query: 76 HNHGNE--GYHVLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEVLKELLKSNKDKPI 249
H +E G+ VL+V+ S + A +++++DF+ A+ L+ D + LL+ + + +
Sbjct: 20 HRESDESCGFRVLKVENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDSSPE-V 78
Query: 250 NLTIFNSKTQSFRNVELVPSQDWGGQGLLGVSIRFCSFEGANENVWHVLDIDPNSPAALA 429
L +F+ K Q R V + + D +G+ +++ S A + +WH+L++ +SP A A
Sbjct: 79 TLEVFSLKGQITRKVNIKINSD----EKIGMVLQWASIAPAVDAIWHILNVIDDSPVARA 134
Query: 430 GLKQMTDYIIGA-ETVLNDPEEFFNLIETHDGQTLKLYVYNIETDTCREVTITPNSTWXX 606
L DYI+G E ++ + +LIE+H + L+LY+YN D+ R+VTI PN W
Sbjct: 135 SLVPYEDYIVGTPEGMMTGEKALSDLIESHLNRPLRLYIYNHYRDSTRQVTIVPNRHWGG 194
Query: 607 XXXXXXXXXXXXXHRIPS 660
HR+P+
Sbjct: 195 NGAIGCGVGHGVLHRLPA 212
>sp|P40555|PSD9_YEAST Probable 26S proteasome regulatory subunit p27 (Proteasome
non-ATPase subunit 2)
Length = 220
Score = 37.7 bits (86), Expect = 0.035
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 103 VLRVQEGSPGHKAGLQAFFDFVVAMGDTKLSQDNEV--LKELLKSNKDKPINLTIFNSKT 276
+ V GSP KA ++ D ++++G+ + +++ ++ ++ N+D+P+ + + +
Sbjct: 137 ISEVVPGSPSDKADIKVD-DKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLL--RE 193
Query: 277 QSFRNVELVPSQDWGGQGLLGVSIR 351
L PS++W G+GLLG I+
Sbjct: 194 GQILKTSLTPSRNWNGRGLLGCRIQ 218
>sp|O00233|PSD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
regulatory subunit p27)
Length = 223
Score = 37.7 bits (86), Expect = 0.035
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +1
Query: 112 VQEGSPGHKAGLQAFFDFVVAMG--DTKLSQDNEVLKELLKSNKDKPINLTIFNSKTQSF 285
+ GSP AGLQ D +V G +T+ Q + +++ ++ KP+N+T+ +
Sbjct: 142 ISPGSPASIAGLQVD-DEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEK-- 198
Query: 286 RNVELVPSQDWGGQGLLGVSI 348
+ LVP++ W G+GLLG +I
Sbjct: 199 HQLRLVPTR-WAGKGLLGCNI 218
>sp|Q9CR00|PSD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
regulatory subunit p27)
Length = 222
Score = 37.4 bits (85), Expect = 0.045
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 112 VQEGSPGHKAGLQAFFDFVVAMG--DTKLSQDNEVLKELLKSNKDKPINLTIFNSKTQSF 285
+ GSP AGLQ D +V G +T+ Q + + +++ ++ KP+N+T+ +
Sbjct: 141 ISPGSPASIAGLQVD-DEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEK-- 197
Query: 286 RNVELVPSQDWGGQGLLGVSI 348
+ L+P++ W G+GLLG +I
Sbjct: 198 HQLRLIPTR-WAGKGLLGCNI 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,952,613
Number of Sequences: 369166
Number of extensions: 1792511
Number of successful extensions: 4819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4794
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)