Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C13-2
(295 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle ... 46 3e-05
sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle ... 44 9e-05
sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle pr... 43 2e-04
sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle ... 43 2e-04
sp|O09117|SYPL_MOUSE Synaptophysin-like protein (Pantophysin) 36 0.024
sp|Q16563|SYPL_HUMAN Synaptophysin-like protein (Pantophysin) 35 0.053
sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2 28 4.9
sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugu... 28 6.5
sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate-... 28 8.4
>sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 45.8 bits (107), Expect = 3e-05
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 116 SSSNFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKHEI-LRVNYSYP 292
+ F KEP F+K+LQ V I AFA ++S C N TK ++ + V + YP
Sbjct: 15 AGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTKSDLNIEVEFEYP 74
Query: 293 F 295
F
Sbjct: 75 F 75
>sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 116 SSSNFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKHEI-LRVNYSYP 292
+ F KEP F+K+LQ V I AFA ++S C N T+ ++ + V + YP
Sbjct: 15 AGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEFEYP 74
Query: 293 F 295
F
Sbjct: 75 F 75
>sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle protein p38)
Length = 307
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 116 SSSNFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKHEI-LRVNYSYP 292
+ F KEP F+K+LQ V I AFA +S +C N T+ + + V + YP
Sbjct: 9 AGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYTGELRLSVECANKTESALNIEVEFEYP 68
Query: 293 F 295
F
Sbjct: 69 F 69
>sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle protein p38) (BM89 antigen)
Length = 314
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 116 SSSNFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKHEI-LRVNYSYP 292
+ F KEP F+K+LQ V I AFA +S +C N T+ + + V + YP
Sbjct: 15 AGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYTGELRLSVECANKTESALNIEVEFEYP 74
Query: 293 F 295
F
Sbjct: 75 F 75
>sp|O09117|SYPL_MOUSE Synaptophysin-like protein (Pantophysin)
Length = 261
Score = 36.2 bits (82), Expect = 0.024
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 NFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQC--INNTKHEILRVNYSYPF 295
N KEP FIKIL+ +I AFA EI C + K++ + + YPF
Sbjct: 25 NLNPLKEPLGFIKILEWFASIFAFATCGGFKGKTEIQVNCPKVGVNKNQTVTATFGYPF 83
>sp|Q16563|SYPL_HUMAN Synaptophysin-like protein (Pantophysin)
Length = 259
Score = 35.0 bits (79), Expect = 0.053
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 125 NFAAFKEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINN-TKHEILRVNYSYPF 295
N KEP FIK+L+ + +I AFA EI C T+++ + + YPF
Sbjct: 25 NLNPLKEPLGFIKVLEWIASIFAFATCGGFKGQTEIQVNCPPAVTENKTVTATFGYPF 82
>sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2
Length = 272
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 140 KEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKH-EILRVNYSYPF 295
+EP FIK+LQ + I AF +C N K + V + YPF
Sbjct: 32 EEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEAKDVSSIIVAFGYPF 84
>sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugumin-29)
Length = 264
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 140 KEPRAFIKILQIVLTIIAFALXXXXXXXXEISYQCINNTKH-EILRVNYSYPF 295
+EP FIK+LQ + I AF +C N K + V + YPF
Sbjct: 32 EEPLGFIKVLQWLFAIFAFGSCGSYSGETGAMVRCNNEAKDVSSIIVLFGYPF 84
>sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Vitamin-B12-independent methionine
synthase isozyme) (Cobalamin-independent methionine
synthase isozyme)
Length = 765
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 207 VVRAKAIIVSTICKILIKALGSLNAAKFDDE 115
+V ++VST C +L A+ +N K DDE
Sbjct: 316 IVGKDKLVVSTSCSLLHTAVDLINETKLDDE 346
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,699,519
Number of Sequences: 369166
Number of extensions: 374325
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)