Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C13-1
(524 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34940|CH60_PLAFG Chaperonin CPN60, mitochondrial precursor 36 0.049
sp|Q9ZD36|Y511_RICPR Hypothetical protein RP511 34 0.19
sp|P54317|LIPR2_HUMAN Pancreatic lipase-related protein 2 p... 33 0.42
sp|Q21988|AMX1_CAEEL Amine oxidase family member 1 33 0.42
sp|Q9PQK7|PYRG_UREPA CTP synthase (UTP--ammonia ligase) (CT... 32 0.93
sp|P47341|Y095_MYCGE Hypothetical lipoprotein MG095 precursor 31 1.6
sp|P47494|Y252_MYCGE Hypothetical tRNA/rRNA methyltransfera... 31 1.6
sp|Q26643|TRF_SARPE Transferrin precursor 30 2.7
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 30 3.5
sp|Q8G818|EFP_BIFLO Elongation factor P (EF-P) 30 4.6
>sp|P34940|CH60_PLAFG Chaperonin CPN60, mitochondrial precursor
Length = 700
Score = 36.2 bits (82), Expect = 0.049
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Frame = +1
Query: 13 NRFDETIDSSKTIKSLKAGWRDKYNLEIESLHFNGQVLNE----NNIGQYYNIRNGSVIQ 180
N +D+ ++ I A DK E +F+ ++N N Y N S +
Sbjct: 230 NAYDKLGKNAAIILDDNADINDKLEFT-EGYNFDRGIINPYLLYNENKDYIEYSNVSTL- 287
Query: 181 IVTGNLDNSINLIVELQSIRPNQKPLCIKVDRNITTERLLSDIQNKMPFNLDDIYLTCRG 360
I N+DN +++ L+ N++PLCI D + + E L + I NK+ + + +
Sbjct: 288 ITDQNIDNIQSILPILEIFAKNKQPLCIIAD-DFSNEVLQTLIINKLKGAIKVLCIVTNS 346
Query: 361 QTLQSGVSLVQQNVKNN 411
+ + + V L N+ NN
Sbjct: 347 KYISADVGLDLNNLHNN 363
>sp|Q9ZD36|Y511_RICPR Hypothetical protein RP511
Length = 950
Score = 34.3 bits (77), Expect = 0.19
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +1
Query: 91 EIESLHFNGQVLNENNIGQYYNIRNGSVIQIVTGNLDNSINLIVE-LQSIRPNQKPLCIK 267
E+E H++G V N+ Q N G + I+ ++ N E ++ + + + K
Sbjct: 550 EVEKSHYHGAVSAIYNLAQKTNYFEGQLPNIIKAGFNSGFNYATEKVKDVFSSSRDFKDK 609
Query: 268 VDRNITTERLLSDIQNKMPFNLDDIYLTCRGQTLQ-SGVSL 387
V IT + L IQN FNL+ L + SGVSL
Sbjct: 610 VIDEITIRKHLDKIQNG-KFNLEGAILLGNLSNIDFSGVSL 649
>sp|P54317|LIPR2_HUMAN Pancreatic lipase-related protein 2 precursor
Length = 469
Score = 33.1 bits (74), Expect = 0.42
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 163 NGSVIQIVTGNLDNSINLIVELQSIRPNQKPLC-IKVDRNITTERLLSDIQNKMPFNLDD 339
NG + + G+ +NS + S++P+ C I VD N+ + + + NK NL +
Sbjct: 372 NGYIRIALYGSNENSKQYEIFKGSLKPDASHTCAIDVDFNVGKIQKVKFLWNKRGINLSE 431
Query: 340 IYLTCRGQTLQSGVSLVQQNVKNNDTI 420
L T+QSG + N ++DT+
Sbjct: 432 PKLGASQITVQSGEDGTEYNFCSSDTV 458
>sp|Q21988|AMX1_CAEEL Amine oxidase family member 1
Length = 783
Score = 33.1 bits (74), Expect = 0.42
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 109 FNGQVLNENNIGQYYNIRNGSVIQIVTGNLDNSINLIVELQSIR-PNQKPLCIKVDRN-- 279
F G+++++ ++G + G QI+ GN++N I L+ E I+ N C +D N
Sbjct: 345 FGGRMMDDQSLG----VSVGKGAQIIVGNINNPITLLCEQIGIKYRNSNFFCPLIDENGR 400
Query: 280 -ITTERLLSDIQNKMPFN 330
T ER D Q + +N
Sbjct: 401 CFTLERKELDDQVDLHYN 418
>sp|Q9PQK7|PYRG_UREPA CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 542
Score = 32.0 bits (71), Expect = 0.93
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +1
Query: 10 VNRFDETIDSSKTIKSLKAGWRDKYNLEIESLHFNGQVLNENNIGQYYNIRNGSVIQIVT 189
V ++ E D+ K++ + + N++++ + Q LNENNI + NG VI +
Sbjct: 307 VGKYVELPDAYKSVLASLELAAIELNIDLKIKYIQPQNLNENNINEELKKINGIVIPSIA 366
Query: 190 GNLDNSINLIVELQSIRPNQKP-LCIKVDRNITTERLLSDI 309
G++ ++ R N P L + NI ++++
Sbjct: 367 GSIKGWPGALLAASYARKNNIPFLAVGTGVNIGIGEFINNV 407
>sp|P47341|Y095_MYCGE Hypothetical lipoprotein MG095 precursor
Length = 398
Score = 31.2 bits (69), Expect = 1.6
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Frame = +1
Query: 1 GREVNRFDETIDSSKTIKSLKAGWRDKYNLEIESLHFNGQVLNENNIGQYYNIRNGSVIQ 180
G E+ D DSS T LK W+ K+N E+ F + LN N+ Y + Q
Sbjct: 242 GNEIKFEDYVTDSSPTTSLLKQVWKSKWNTELTHTSFKFK-LNSFNVLLTYQLEANQKSQ 300
Query: 181 IVTGNLDNSI--NLIVELQSIRPNQKPLCIKVDRNITTER---LLSDIQNK 318
+ NL ++ S + L + + T E LL+D+Q K
Sbjct: 301 YLPNGFSFLFPSNLEGKIDSSKSYWNNL-VDFSKRTTNEENTMLLTDLQKK 350
>sp|P47494|Y252_MYCGE Hypothetical tRNA/rRNA methyltransferase MG252
Length = 242
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +1
Query: 10 VNRFDETIDSSKTIKSLKAGWRDKYNLE-IESLHFNGQVLNENNIG-QYYNIRNGSVIQI 183
V F+E I++ IK + R K + IE+ N Q+ + N QY +I + ++ +
Sbjct: 13 VKAFEEAINNQVHIKLVNISIRHKKLIPLIEAKKINFQIHSTNWFNNQYRDINHQELVAV 72
Query: 184 VTGNLDNSINLIVELQSIRPNQKPLCIKVDRNITTERLLSDIQNKMPFNLDDIYLTCRGQ 363
+ N Q + P + + + ++ +T +L +IQ+ P+N I TC
Sbjct: 73 LDTN-----------QLLIPLDQLVKVVENKKCSTLVMLDEIQD--PYNFGAILRTCLAS 119
Query: 364 TLQSGVSLVQQNVKNNDTIM 423
+ + V N+T+M
Sbjct: 120 EVDGIIFKKNNQVPINNTVM 139
>sp|Q26643|TRF_SARPE Transferrin precursor
Length = 629
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 79 KYNLEIESLHFNGQVLNENNIGQYYNIRNGSVIQIVTGNLDNSINLIVELQSIR--PNQK 252
K NL+ +H+NGQ Y N G T + + +I +IV Q + N++
Sbjct: 460 KENLQSMPIHYNGQDHRAEKAAAYLNKLRGINTCQTTPSSEKNI-MIVNAQQLEQYKNKQ 518
Query: 253 PLCIKVDRNITTERLLSDIQNKMP 324
LC +D+ TE +++ +P
Sbjct: 519 LLCSSLDKKPVTEWQSCNLEANLP 542
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 30.0 bits (66), Expect = 3.5
Identities = 26/100 (26%), Positives = 44/100 (44%)
Frame = +1
Query: 19 FDETIDSSKTIKSLKAGWRDKYNLEIESLHFNGQVLNENNIGQYYNIRNGSVIQIVTGNL 198
F I +I SL A + + NL + +HFNG + +N N+ G ++ +
Sbjct: 751 FKTLIKKYTSINSLVANEQTRNNLNLGLIHFNGHLSVVSNA----NLLTGRPVKFIYYKF 806
Query: 199 DNSINLIVELQSIRPNQKPLCIKVDRNITTERLLSDIQNK 318
D +N L + N K I+++ N + LS +NK
Sbjct: 807 DKRLNSY--LIYVNQNLKKF-IQLNNNFLKPKPLSHQKNK 843
>sp|Q8G818|EFP_BIFLO Elongation factor P (EF-P)
Length = 188
Score = 29.6 bits (65), Expect = 4.6
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Frame = +1
Query: 154 NIRNGSVIQIVTGNLDNSINLIVELQSIRPNQKPLCIKVD-RNITTERLLSDIQN---KM 321
+I+NGSV+ NLD + +++ Q ++P + P ++ +N+ + +++ N KM
Sbjct: 7 DIKNGSVL-----NLDGQLWTVMKFQHVKPGKGPAFVRTTIKNVLSGKIVDKTFNAGMKM 61
Query: 322 PFNLDDIYLTCRGQTLQ----SGVSLVQQNVKNNDTIMV 426
F T +TLQ G + V ++ D IMV
Sbjct: 62 EFE------TVDNRTLQYSYEDGDNFVFMDMTTYDQIMV 94
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,832,862
Number of Sequences: 369166
Number of extensions: 1004831
Number of successful extensions: 2153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2152
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)