Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M04
(488 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36044|MNN4_YEAST Protein MNN4 34 0.21
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (U... 33 0.27
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 33 0.27
sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein ... 33 0.36
sp|Q6DRL5|MBB1A_BRARE Myb-binding protein 1A-like protein 33 0.46
sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor comp... 32 0.61
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 32 0.61
sp|P25977|UBF1_RAT Nucleolar transcription factor 1 (Upstre... 32 0.79
sp|O67124|RAD50_AQUAE Probable DNA double-strand break repa... 32 1.0
sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upst... 31 1.4
>sp|P36044|MNN4_YEAST Protein MNN4
Length = 1178
Score = 33.9 bits (76), Expect = 0.21
Identities = 24/105 (22%), Positives = 40/105 (38%)
Frame = +3
Query: 6 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXX 185
EE+ KE EKK + E E E KK++ + K+ EEK + ++ ++ +
Sbjct: 1047 EEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEEK 1106
Query: 186 XXXXXXXXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENE 320
K E+ K+K+ K E E+E
Sbjct: 1107 KKQEEGEKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNKKNEDE 1151
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/99 (25%), Positives = 41/99 (41%)
Frame = +3
Query: 24 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXX 203
KE EKK + E E E KK++ + K+ EEK + ++ ++ Q
Sbjct: 1045 KEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQ----------- 1093
Query: 204 XXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENE 320
+K EE K+K G K E+ ++ +NE
Sbjct: 1094 -----EEEEKKKKEEEEKKKQEEGEKMK-NEDEENKKNE 1126
Score = 29.3 bits (64), Expect = 5.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 6 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQ 143
E+K N +E EKK + +N N++ E KKQ + ++ E+K Q
Sbjct: 1129 EKKKNEEE--EKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQ 1172
Score = 28.9 bits (63), Expect = 6.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 9 EKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQ 170
EK ++ KK D E N+E E KKQ + + +D E+K Q ++ ++++
Sbjct: 1113 EKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNKKN-EDEEKKKQEEEEKKKNE 1165
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
(UBF-1-B) (xUBF-2)
Length = 701
Score = 33.5 bits (75), Expect = 0.27
Identities = 23/101 (22%), Positives = 47/101 (46%)
Frame = +3
Query: 24 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXX 203
K VI+ K+ D E+ ++DE E D +D +D E+ +++GD ++
Sbjct: 607 KLVIQSKSDDDEDDEDDEDEED----DDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENE 662
Query: 204 XXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 326
E E+ + + +GSS+ + + DS++++ N
Sbjct: 663 DEEDEEDDDEDNEED--DDDNESGSSSSSSSSADSSDSDSN 701
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 33.5 bits (75), Expect = 0.27
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +3
Query: 51 DSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXS 230
D+ +E ++ LSDL DI DSE K + + + + S
Sbjct: 247 DNRKPVKEEKVEERDLLSDLQDISDSERKTSSAESSSAES----------------GSGS 290
Query: 231 EKGTEEHVKEKDCNGSSAKVTENGDSAENE 320
E+ EE +E++ GS+++ +E + E E
Sbjct: 291 EEEEEEEEEEEEEEGSTSEESEEEEEEEEE 320
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52
Length = 505
Score = 33.1 bits (74), Expect = 0.36
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 54 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNG 149
S +DND P K+Q+L++ N I D+ + NG
Sbjct: 181 SNTIDNDNPAVKRQKLNNQNSIPDTNKVKYNG 212
>sp|Q6DRL5|MBB1A_BRARE Myb-binding protein 1A-like protein
Length = 1269
Score = 32.7 bits (73), Expect = 0.46
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 6 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQ 170
++K LKE E + E+ DNDE + + ++ EE + + DD EED+
Sbjct: 723 DKKRKLKEEDEDDDDEEEDDDNDEGDDDDDDDDEEEGGEEGEESSDSSDDEEEDE 777
>sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor complex subunit 1
Length = 585
Score = 32.3 bits (72), Expect = 0.61
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 54 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDA 158
S+ VD DEP++KKQRL + D + GDD+
Sbjct: 361 SDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDS 395
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 32.3 bits (72), Expect = 0.61
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 9 EKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQ 170
E++ +E E++ + E + +E E +++ + D +D ++ ++ DDAEED+
Sbjct: 573 EEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDE 626
Score = 31.6 bits (70), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 6 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNG-DDAEED 167
EE+ +E E++ + E + +E E + + D +D ++ E+ A+ DDAEED
Sbjct: 578 EEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEED 632
Score = 28.5 bits (62), Expect = 8.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 6 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEED 167
EE+ +E E++ D + D D+ E + + D D+EE DD EED
Sbjct: 591 EEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDED--DAEEDDDEEDDDEED 642
>sp|P25977|UBF1_RAT Nucleolar transcription factor 1 (Upstream binding factor 1)
(UBF-1)
Length = 764
Score = 32.0 bits (71), Expect = 0.79
Identities = 19/97 (19%), Positives = 42/97 (43%)
Frame = +3
Query: 36 EKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXX 215
E++ D EN D+ E S ++ +D +E + DD ++D+
Sbjct: 691 EEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEDDDDDEDDDED-------------- 736
Query: 216 XXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 326
++ ++ + GSS+ + +GDS++++ N
Sbjct: 737 ---------DDEDEDNESEGSSSSSSSSGDSSDSDSN 764
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
Length = 978
Score = 31.6 bits (70), Expect = 1.0
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 15 NNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQN 146
N+LKE +EK + E + + PE K+R+ L +++ +EK ++
Sbjct: 535 NSLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIEKEKLEH 578
>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upstream binding factor 1)
(UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Frame = +3
Query: 51 DSENVDNDEPETKKQRLSDLNDIKDS-----EEKAQNGDDAEEDQXXXXXXXXXXXXXXX 215
D ++ D DE E + D DS E+++++GD+ EED
Sbjct: 684 DEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDE------------ 731
Query: 216 XXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 326
+ ++ ++ + GSS+ + +GDS++++ N
Sbjct: 732 ----DDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 764
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,879,899
Number of Sequences: 369166
Number of extensions: 508057
Number of successful extensions: 3341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3170
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)