Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K13
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62243|RS8_RAT 40S ribosomal protein S8 >gi|54039529|sp|... 230 2e-60
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 230 2e-60
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 227 2e-59
sp|P62247|RS8_BRARE 40S ribosomal protein S8 226 4e-59
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 221 1e-57
sp|O76756|RS8_APIME 40S ribosomal protein S8 216 5e-56
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 212 7e-55
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 204 1e-52
sp|P49199|RS8_ORYSA 40S ribosomal protein S8 194 1e-49
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 191 1e-48
>sp|P62243|RS8_RAT 40S ribosomal protein S8
sp|P62242|RS8_MOUSE 40S ribosomal protein S8
sp|P62241|RS8_HUMAN 40S ribosomal protein S8
Length = 208
Score = 230 bits (587), Expect = 2e-60
Identities = 113/175 (64%), Positives = 135/175 (77%)
Frame = +2
Query: 8 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
HKKRKYELGRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 367
VYNASNNELVRTKTLVKN IVLID+ P++QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG-----RKKGAKLTPEEEEI 136
Query: 368 FNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS +KY+ R+K++++S+ ++EQF QG LLACI+SRPGQ GRADGY+LE
Sbjct: 137 LNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLE 191
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8
Length = 208
Score = 230 bits (586), Expect = 2e-60
Identities = 113/175 (64%), Positives = 133/175 (76%)
Frame = +2
Query: 8 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
HKKRKYELGRP +NTKL PKRIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPPSNTKLGPKRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 367
VYNASNNELVRTKTLVKN ++L+D+APF+QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLG-----RKKGAKLTPEEEDI 136
Query: 368 FNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS +K++ R+K+S++S + EQF QG LLACISSRPGQ GRADGY+LE
Sbjct: 137 LNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLE 191
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8
Length = 208
Score = 227 bits (578), Expect = 2e-59
Identities = 112/175 (64%), Positives = 132/175 (75%)
Frame = +2
Query: 8 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
HKKRKYE GRPAANTK+ P+RIH VRVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYEPGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDV 81
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 367
VYNASNNELVRTKTLVKN I+L+D+ PF+QW+EAHY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLG-----RKKGAKLTPEEEEI 136
Query: 368 FNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS +KYE R+K +++S ++EQF QG LLACI+SRPGQ GRADGY+LE
Sbjct: 137 LNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLE 191
>sp|P62247|RS8_BRARE 40S ribosomal protein S8
Length = 208
Score = 226 bits (576), Expect = 4e-59
Identities = 110/175 (62%), Positives = 132/175 (75%)
Frame = +2
Query: 8 HKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
HKKRKYELGRPAANTK+ P+RIH +RVRGGN K RALRLD GNFSW + +RK RIID
Sbjct: 22 HKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDV 81
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTI 367
VYNASNNELVRTKTLVKN +VL+D+ P++QWYE+HY +G A PEE I
Sbjct: 82 VYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLG-----RKKGAKLTPEEEEI 136
Query: 368 FNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS +K+ R+K +++S ++EQF QG LLACISSRPGQ GRADGY+LE
Sbjct: 137 LNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLE 191
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8
Length = 208
Score = 221 bits (563), Expect = 1e-57
Identities = 112/174 (64%), Positives = 131/174 (75%)
Frame = +2
Query: 11 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 190
KKRKYELGRPAANTKL P+RIH VR RGGN K RALRLD GNFSW + +RK+RIID V
Sbjct: 23 KKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVV 82
Query: 191 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 370
YNASNNELVRTKTLVKN IV++DA PF+QWYE+HYL +G +A E I
Sbjct: 83 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA-----EDAII 137
Query: 371 NQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS +KY ARQ+ S+V + ++EQF G LLAC++SRPGQ GRADGYILE
Sbjct: 138 NKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILE 191
>sp|O76756|RS8_APIME 40S ribosomal protein S8
Length = 207
Score = 216 bits (549), Expect = 5e-56
Identities = 110/174 (63%), Positives = 128/174 (73%)
Frame = +2
Query: 11 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 190
KKRK+ELGRPAANTKL P+RIH VR RGGN KK +LRLD GNFSW + +RK RIID V
Sbjct: 23 KKRKFELGRPAANTKLGPQRIHTVRTRGGN-KKLSLRLDTGNFSWGSECTTRKTRIIDVV 81
Query: 191 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 370
YNASNNELVRTKTLVKN IV IDA PF+QWYE HY+ +G +A EE +
Sbjct: 82 YNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEE-----VL 136
Query: 371 NQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
N+KRS KY+ARQ+ ++V ++EQFA G +LACISSRPGQ GR DGYILE
Sbjct: 137 NKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILE 190
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8
Length = 208
Score = 212 bits (539), Expect = 7e-55
Identities = 104/174 (59%), Positives = 129/174 (74%)
Frame = +2
Query: 11 KKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDTV 190
KKRK+ELGRPAANTKL R+H VR RGGN K RALRL+ GNF+WA + V+RK RI D V
Sbjct: 23 KKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVV 82
Query: 191 YNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEESTIF 370
YNASNNELVRTKTLVKN+IV+IDA PF+QWYEAHY+ +G ++ +E+ +
Sbjct: 83 YNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHA---QKEDENDVL 139
Query: 371 NQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
+KRS ++KY RQK +V +++QF G +LACISSRPGQ GR+DGYILE
Sbjct: 140 TKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILE 193
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8
Length = 208
Score = 204 bits (520), Expect = 1e-52
Identities = 104/176 (59%), Positives = 126/176 (71%)
Frame = +2
Query: 5 PHKKRKYELGRPAANTKLAPKRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIID 184
PHKKRK+ELGRPAANTK+ R+ VR RGGN K RALRLD GNFSWA + +RK RI+D
Sbjct: 21 PHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVD 80
Query: 185 TVYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDANEEPEEST 364
T+YNA+NNELVRTKTLVK I+ +DAAPF+QWYEAHY + +A E++
Sbjct: 81 TMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLA-----RKKNAKLSEEDNA 135
Query: 365 IFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
I N+KRS ++KY RQK + V + EQF G LLA ISS PGQVG+A+GYILE
Sbjct: 136 ILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILE 191
>sp|P49199|RS8_ORYSA 40S ribosomal protein S8
Length = 220
Score = 194 bits (493), Expect = 1e-49
Identities = 103/177 (58%), Positives = 124/177 (70%), Gaps = 3/177 (1%)
Frame = +2
Query: 11 KKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW +AV+RK RI+D
Sbjct: 23 KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIGXXXXXXXXDAN--EEPEES 361
VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG + E+
Sbjct: 83 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKEPPHPRGCCGQDAEA 142
Query: 362 TIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
T K+S+ ++K E RQ+ + ++EQF G LLACISSRPGQ GRADGYILE
Sbjct: 143 TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILE 199
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8
Length = 221
Score = 191 bits (486), Expect = 1e-48
Identities = 102/178 (57%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Frame = +2
Query: 11 KKRKYELGRPAANTKLAP-KRIHDVRVRGGNIKKRALRLDHGNFSWAHQAVSRKARIIDT 187
KKRKYELGR ANTKL+ K + VRVRGGN+K RALRLD GN+SW +AV+RK RI+D
Sbjct: 23 KKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDV 82
Query: 188 VYNASNNELVRTKTLVKNTIVLIDAAPFKQWYEAHYLKEIG---XXXXXXXXDANEEPEE 358
VYNASNNELVRT+TLVK+ IV +DAAPFKQWY HY +IG +A + E
Sbjct: 83 VYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVE 142
Query: 359 STIFNQKRSSSCLQKYEARQKDSEVSTQMKEQFAQGSLLACISSRPGQVGRADGYILE 532
+ K+S+ +K E R++ + ++EQF G LLACISSRPGQ GRADGYILE
Sbjct: 143 AAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILE 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,835,585
Number of Sequences: 369166
Number of extensions: 914844
Number of successful extensions: 2059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)