Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M24
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31) 107 6e-24
sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 107 6e-24
sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A 98 5e-21
sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B 98 7e-21
sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 93 2e-19
sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 92 4e-19
sp|P49207|RL34_HUMAN 60S ribosomal protein L34 91 6e-19
sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34 91 6e-19
sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A 88 5e-18
sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribo... 87 9e-18
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31)
Length = 130
Score = 107 bits (268), Expect = 6e-24
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
RTPGG+LVY+Y KK+ TVPKCG CK L GIK RP ER R+ +R KTV+R +GG CH
Sbjct: 24 RTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHR 83
Query: 255 CVKKRIIRSFLVEEDKLICQIKETEL 332
C+++RIIR+FL++E K++ +K +L
Sbjct: 84 CLRERIIRAFLIDEQKVVKVLKAQQL 109
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34
Length = 139
Score = 107 bits (268), Expect = 6e-24
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
RTPGG+LVY+Y KK+ TVPKCG CK L GIK RP ER R+ +R KTV+R +GG CH
Sbjct: 24 RTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHR 83
Query: 255 CVKKRIIRSFLVEEDKLICQIKETEL 332
C+++RIIR+FL++E K++ +K +L
Sbjct: 84 CLRERIIRAFLIDEQKVVKVLKAQQL 109
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A
Length = 121
Score = 98.2 bits (243), Expect = 5e-21
Identities = 47/81 (58%), Positives = 60/81 (74%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
+TPGG L + KK T PKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +
Sbjct: 24 KTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCAN 83
Query: 255 CVKKRIIRSFLVEEDKLICQI 317
CVK+RIIR+FL+EE K++ ++
Sbjct: 84 CVKERIIRAFLIEEQKIVKKV 104
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B
Length = 121
Score = 97.8 bits (242), Expect = 7e-21
Identities = 46/81 (56%), Positives = 60/81 (74%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
+TPGG L + KK T PKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +
Sbjct: 24 KTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCAN 83
Query: 255 CVKKRIIRSFLVEEDKLICQI 317
CVK+RI+R+FL+EE K++ ++
Sbjct: 84 CVKERIVRAFLIEEQKIVKKV 104
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34
Length = 117
Score = 92.8 bits (229), Expect = 2e-19
Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = +3
Query: 72 TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 245
+RTPG ++VY+Y KK G PK CG C L G++A+RP R+SK QK VSRAYGGS
Sbjct: 23 SRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSM 82
Query: 246 CHSCVKKRIIRSFLVEEDKLICQIKETE 329
C CV+ RI R+FL+EE K++ ++ + +
Sbjct: 83 CAKCVRDRIKRAFLIEEQKIVVKVLKAQ 110
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34
Length = 117
Score = 92.0 bits (227), Expect = 4e-19
Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = +3
Query: 72 TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 245
+RTPG ++VY+Y KK G PK CG C L GI+A+RP R+SK +K VSRAYGGS
Sbjct: 23 SRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSM 82
Query: 246 CHSCVKKRIIRSFLVEEDKLICQIKETE 329
C CV+ RI R+FL+EE K++ ++ + +
Sbjct: 83 CAKCVRDRIKRAFLIEEQKIVVKVLKAQ 110
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34
Length = 117
Score = 91.3 bits (225), Expect = 6e-19
Identities = 43/88 (48%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = +3
Query: 72 TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 245
+RTPG ++VY+Y KK G PK CG C L G++A+RP R+SK +K VSRAYGGS
Sbjct: 23 SRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSM 82
Query: 246 CHSCVKKRIIRSFLVEEDKLICQIKETE 329
C CV+ RI R+FL+EE K++ ++ + +
Sbjct: 83 CAKCVRDRIKRAFLIEEQKIVVKVLKAQ 110
>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34
Length = 117
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = +3
Query: 72 TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 245
+RTPG ++VY+Y KK G PK CG C L GI+A+RP R+SK +K VSRAYGGS
Sbjct: 23 SRTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSM 82
Query: 246 CHSCVKKRIIRSFLVEEDKLICQIKETE 329
C CV+ RI R+FL+EE K++ ++ + +
Sbjct: 83 CAKCVRDRIKRAFLIEEQKIVVKVLKAQ 110
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A
Length = 112
Score = 88.2 bits (217), Expect = 5e-18
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
+TPG + Y++ KK GT+P+CGD + L GI A+RP E +R+S +KTV RAYGG +
Sbjct: 24 KTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreFARLSHNKKTVQRAYGGCLSAN 83
Query: 255 CVKKRIIRSFLVEEDKLICQ 314
VK RI+R+FL+EE K++ Q
Sbjct: 84 AVKDRIVRAFLIEEQKIVKQ 103
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2)
Length = 111
Score = 87.4 bits (215), Expect = 9e-18
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = +3
Query: 75 RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 254
+TPG + Y++ KK GT+P+CGD + L GI A+RP E +R+S QK V RAYGG +
Sbjct: 24 KTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreFARLSHNQKKVQRAYGGCLSAN 83
Query: 255 CVKKRIIRSFLVEEDKLICQ 314
VK RI+R+FL+EE K++ Q
Sbjct: 84 AVKDRIVRAFLIEEQKIVKQ 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,994,737
Number of Sequences: 369166
Number of extensions: 749253
Number of successful extensions: 1868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)