Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M17
(779 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 383 e-106
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 382 e-106
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 379 e-105
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 378 e-105
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 271 1e-72
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 264 2e-70
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 263 5e-70
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 251 1e-66
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 251 2e-66
sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase bet... 188 1e-47
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 383 bits (983), Expect = e-106
Identities = 181/228 (79%), Positives = 207/228 (90%)
Frame = +3
Query: 3 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 182
AYNM+D+I+ VVDE EFFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SV
Sbjct: 313 AYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSV 372
Query: 183 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 362
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPK+T+ITR
Sbjct: 373 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITR 432
Query: 363 KAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFA 542
KAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + + +AEY++KFA
Sbjct: 433 KAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEYIEKFA 491
Query: 543 NPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
NPFPAAVRGFVDDII+P TRA+IC DLD+L K++ PW+KH NIPL
Sbjct: 492 NPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 382 bits (980), Expect = e-106
Identities = 180/228 (78%), Positives = 207/228 (90%)
Frame = +3
Query: 3 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 182
AY+M+D+IY +VDE +FFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SV
Sbjct: 313 AYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSV 372
Query: 183 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 362
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 373 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 432
Query: 363 KAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFA 542
KAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + + +AEY++KFA
Sbjct: 433 KAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEYIEKFA 491
Query: 543 NPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
NPFPAAVRGFVDDII+P TRA+IC DLD+L K++ PW+KH NIPL
Sbjct: 492 NPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 379 bits (972), Expect = e-105
Identities = 179/228 (78%), Positives = 205/228 (89%)
Frame = +3
Query: 3 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 182
AYNMLD+I+ V+DE EFFEIMP YAKNI+IGF RM+GRTVGI+GNQP VA+GCLDIN+SV
Sbjct: 315 AYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLDINSSV 374
Query: 183 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 362
KGARFVRFCDAF+IPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 375 KGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 434
Query: 363 KAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFA 542
KAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + +AEYV+KFA
Sbjct: 435 KAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHEDVE-AAQAEYVEKFA 493
Query: 543 NPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
NPFPAAVRGFVDDII+P TRA+IC DL++L K++ PW+KH N+PL
Sbjct: 494 NPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANVPL 541
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 378 bits (971), Expect = e-105
Identities = 179/228 (78%), Positives = 205/228 (89%)
Frame = +3
Query: 3 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 182
AYNMLD+I+ V+DE EFFEIMP+YA NI++GF RM+GRTVGI+GNQP VA+GCLDIN+SV
Sbjct: 315 AYNMLDIIHAVIDEREFFEIMPSYALNIVVGFARMNGRTVGIVGNQPNVASGCLDINSSV 374
Query: 183 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 362
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 375 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 434
Query: 363 KAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFA 542
KAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + +AEYV+KFA
Sbjct: 435 KAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVE-AAQAEYVEKFA 493
Query: 543 NPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
NPFPAAVRGFVDDII+P TRA+IC DL++L K++ PW+KH NIPL
Sbjct: 494 NPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANIPL 541
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 271 bits (693), Expect = 1e-72
Identities = 136/238 (57%), Positives = 168/238 (70%), Gaps = 11/238 (4%)
Frame = +3
Query: 6 YNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVK 185
Y+M +VI +VDE EF E+ +A N++ GFGR+ G +VG++ NQP AG LDI+AS K
Sbjct: 309 YDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQLAGTLDIDASEK 368
Query: 186 GARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRK 365
ARFVRFCDAFNIP+LT VDVPGFLPGT Q++ IIR GAKLLYAYAEATVP +T+ITRK
Sbjct: 369 AARFVRFCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAEATVPLVTVITRK 428
Query: 366 AYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTK---------- 515
AYGGAYDVM SKHL DIN AWPTA++AVMGA+GA I++R +E +
Sbjct: 429 AYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAAERGEDVEALRAR 488
Query: 516 -EAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
+ EY D NP+ AA RG+VD +I P TR + + L +L K+ P KKHGNIPL
Sbjct: 489 LQQEYEDTLCNPYVAAERGYVDSVIPPSHTRGHVARALRMLADKREALPAKKHGNIPL 546
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 264 bits (674), Expect = 2e-70
Identities = 139/238 (58%), Positives = 166/238 (69%), Gaps = 11/238 (4%)
Frame = +3
Query: 6 YNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVK 185
Y+M +VI ++D+ EF EI YA+NI++GFGR+ GR VGI+ NQP AGCLDINAS K
Sbjct: 312 YDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEK 370
Query: 186 GARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRK 365
ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLLYAY EATVPKIT+ITRK
Sbjct: 371 AARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRK 430
Query: 366 AYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLT 512
AYGGAY VM SK + D+N AWPTA++AVMGA GAV ++R +E +L
Sbjct: 431 AYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLR 490
Query: 513 KEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
+ EY D NP+ AA RG+VD +I P TR I L LL+ K P KKHGN+PL
Sbjct: 491 LQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPPKKHGNVPL 548
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 263 bits (671), Expect = 5e-70
Identities = 135/238 (56%), Positives = 164/238 (68%), Gaps = 11/238 (4%)
Frame = +3
Query: 6 YNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVK 185
Y+M +V+ ++DE EF E+ YA NI++G GR+ R VGI+ NQP AGCLDINAS K
Sbjct: 312 YDMHEVVTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPVGIVANQPIQFAGCLDINASEK 371
Query: 186 GARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRK 365
ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLL+AY EATVPKIT+ITRK
Sbjct: 372 AARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEATVPKITVITRK 431
Query: 366 AYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLT 512
AYGGAY VM SK++ D+N AWPTA++AVMGA GAV ++R ++ +L
Sbjct: 432 AYGGAYCVMGSKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQAAKNGANVDELRLQ 491
Query: 513 KEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
+ EY D NP+ AA RG+VD +I P TR I L LL+ K P KKHGNIPL
Sbjct: 492 LQQEYEDTLVNPYIAAERGYVDAVIPPSHTRGYIATALHLLERKIAHLPPKKHGNIPL 549
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 251 bits (642), Expect = 1e-66
Identities = 125/234 (53%), Positives = 161/234 (68%), Gaps = 7/234 (2%)
Frame = +3
Query: 6 YNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVK 185
Y++ DVI +VD ++ E+ YA N++ F R++GR+VGI+ NQP V +GCLDINAS K
Sbjct: 291 YDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDK 350
Query: 186 GARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRK 365
A FV FCD+FNIPL+ VDVPGFLPG QEYGGIIRHGAK+LYAY+EATVPKIT++ RK
Sbjct: 351 AAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRK 410
Query: 366 AYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFR-------GSGSEQLTKEAE 524
AYGG+Y M ++ L D YAWP+AE+AVMGA+GA +IFR + + K E
Sbjct: 411 AYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEE 470
Query: 525 YVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
Y + F P+ AA RG VDD+I+P TR KI L++ K+ P KK +PL
Sbjct: 471 YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 251 bits (641), Expect = 2e-66
Identities = 129/234 (55%), Positives = 162/234 (69%), Gaps = 7/234 (2%)
Frame = +3
Query: 6 YNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVK 185
Y++ VI + D FFEI P +AKNI+IGF R+ + +GI+ +QPK AG L I+A+ K
Sbjct: 273 YDVRKVIRELADPQSFFEIQPFFAKNIVIGFARLGEKAIGIVASQPKHLAGSLTIDAADK 332
Query: 186 GARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRK 365
ARF+RFCDAF+IPLLT DVPGFLPG QE+ GIIRHGAKLL+AYAEATVPK+T+I RK
Sbjct: 333 AARFIRFCDAFDIPLLTVEDVPGFLPGIQQEHNGIIRHGAKLLFAYAEATVPKVTLIIRK 392
Query: 366 AYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF----RGSGSEQLTKE---AE 524
AYGGAY M+SK + D+ +AWP AE+AVMG +GA I++ + S Q TK AE
Sbjct: 393 AYGGAYVAMNSKAIGADLVFAWPNAEIAVMGPEGAASILYEKEIKASADPQKTKREKTAE 452
Query: 525 YVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
Y + A P+ AA G VDDII P +R ++ Q +L HK P KKHGNIPL
Sbjct: 453 YKKQNAGPYKAAACGMVDDIILPEESRGRLIQAFHMLTHKTEERPKKKHGNIPL 506
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 473
Score = 188 bits (478), Expect = 1e-47
Identities = 100/238 (42%), Positives = 149/238 (62%), Gaps = 10/238 (4%)
Frame = +3
Query: 3 AYNMLDVIYGVVD-ESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINAS 179
AY++ ++ ++D ++ F E +A ++++G GR+ GRTVG++ N P GCL+ ++
Sbjct: 241 AYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRTVGVLANNPLRLGGCLNSESA 300
Query: 180 VKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIIT 359
K ARFVR CDAF IPL+ VDVPG+LPG QE+GG++R GAKLL+A+ E TVP++T++T
Sbjct: 301 EKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHAFGECTVPRVTLVT 360
Query: 360 RKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYV--- 530
RK YGGAY M+S+ L +AWP AEVAVMGAK AV I+ + + E E +
Sbjct: 361 RKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGILHKKKLAAAPEHEREALHDQ 420
Query: 531 -----DKFANPFPAAVR-GFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 686
++ A +A+ G VD+ I+P TR+K+ + L ++ +H NIPL
Sbjct: 421 LAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQAPARR-----GRHKNIPL 473
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,689,969
Number of Sequences: 369166
Number of extensions: 2106778
Number of successful extensions: 5801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5780
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)